FC920949

Overview
NameFC920949
Unique NameFC920949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length242
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14221 contig Ccv1_Contig14221:234..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_COTJA (40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_CHICK (40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_CANFA (40S ribosomal protein S17 OS=Canis familiaris GN=RPS17 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_DROME (40S ribosomal protein S17 OS=Drosophila melanogaster GN=RpS17 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.685e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDP 217
            AG+ THLM R+++  VRGIS+KLQE ERERR ++VP  SA++ D IEVD  T +ML+ L  + I GL    P
Sbjct:   51 AGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQP 122          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_CAEEL (40S ribosomal protein S17 OS=Caenorhabditis elegans GN=rps-17 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.363e-12
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQ---IEVDKATLDMLEALGMN 187
            AG+ THLM RI+ GPVRGIS+KLQE ERERR +++P+ S +   Q   I+VD  T DML+A G N
Sbjct:   51 AGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17B_YEAST (40S ribosomal protein S17-B OS=Saccharomyces cerevisiae GN=RPS17B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.836e-12
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQ----IEVDKATLDMLEALGM 184
            AG++THLM RIQ GPVRGIS KLQE ERER+  +VP+ SA+   +    + VD  T D++++LG+
Sbjct:   51 AGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGL 115          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17A_YEAST (40S ribosomal protein S17-A OS=Saccharomyces cerevisiae GN=RPS17A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.836e-12
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQ----IEVDKATLDMLEALGM 184
            AG++THLM RIQ GPVRGIS KLQE ERER+  +VP+ SA+   +    + VD  T D++++LG+
Sbjct:   51 AGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGL 115          
The following BLAST results are available for this feature:
BLAST of FC920949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RS17_COTJA4.238e-1451.9040S ribosomal protein S17 OS=Coturnix coturnix jap... [more]
RS17_CHICK4.238e-1451.9040S ribosomal protein S17 OS=Gallus gallus GN=RPS1... [more]
RS17_CANFA4.238e-1451.9040S ribosomal protein S17 OS=Canis familiaris GN=R... [more]
RS17_BOVIN4.238e-1451.9040S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_DROME4.685e-1352.7840S ribosomal protein S17 OS=Drosophila melanogast... [more]
RS17_CAEEL1.363e-1256.9240S ribosomal protein S17 OS=Caenorhabditis elegan... [more]
RS17B_YEAST8.836e-1252.3140S ribosomal protein S17-B OS=Saccharomyces cerev... [more]
RS17A_YEAST8.836e-1252.3140S ribosomal protein S17-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC32201B12EF RVDevelopN Citrus clementina cDNA clone C32201B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920949 ID=FC920949; Name=FC920949; organism=Citrus clementina; type=EST; length=242bp
CGCCGGGTTCTCGACCCACTTGATGAACCGGATCCAGAATGGTCCGGTTC
GTGGCATCTCGTTGAAGCTCCAAGAGGTGGAGCGCGAGCGCCGCATGGAC
TTTGTCCCGGACGAGAGTGCCATCAAGACTGATCAAATTGAGGTCGATAA
GGCGACTCTTGACATGCTTGAGGCTCTTGGTATGAATGAGATCCCGGGTC
TTGTTCGGGTCGACCCGGTTGCTCCAGGAGTTGAGTTCGGGC
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