FC920954

Overview
NameFC920954
Unique NameFC920954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10215 contig Ccv1_Contig10215:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS13_DICDI (40S ribosomal protein S13 OS=Dictyostelium discoideum GN=rps13 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.474e-53
Identity = 104/151 (68.87%), Postives = 118/151 (78.15%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            MGRMHS GKGIS S+LPY R P +W K ++ +V + +CK AK+G TPS+IG  LRDS G+AQVK+VTGSKILRILK +GLAP IPEDLYHLIKKAV I KHL+R RKD D KF L LVESRIHRL R Y+K   L P WKYES  ASTLVA
Sbjct:    1 MGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA 151          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS13_MUSDO (40S ribosomal protein S13 (Fragment) OS=Musca domestica GN=RpS13 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.882e-46
Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 2
Query:  197 KFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            K  KKGLTPS+IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:    2 KLGKKGLTPSKIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 114          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS13_PIG (40S ribosomal protein S13 (Fragment) OS=Sus scrofa GN=RPS13 PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.950e-43
Identity = 82/107 (76.64%), Postives = 98/107 (91.59%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 403
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRK
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_PYRKO (30S ribosomal protein S15P/S13e OS=Pyrococcus kodakaraensis GN=rps15p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.897e-36
Identity = 73/150 (48.67%), Postives = 106/150 (70.67%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M R+H+R +G S S  P +  PP+W++ ++++VE  + K  K+G + + IG ILRD +GI  VK +TG KI +IL+ +GLAPEIPEDL  LI++AV +RKHLE++ KDK S+  L L+ES+I RL +YY++T KLP  W+Y+   A  LV
Sbjct:    1 MARIHARKRGKSGSKRPPRTAPPAWVEYTAEEVEALVVKLRKEGYSTAMIGTILRDQYGIPSVKLITGKKITKILEENGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDKHSRRGLQLIESKIRRLVKYYRRTGKLPAKWRYDPEQAKLLV 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METKA (30S ribosomal protein S15P/S13e OS=Methanopyrus kandleri GN=rps15p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 508
            M RMHSR +G S S  P +  PPSW++ S ++VE  +   AK+G  P+ IG+ LRD +GI  VK +TG KI  IL+ HGLAPE+PEDL +LI++A  +R+HL+R+ KD  SK  L L+ES+IHRL +YYK+   LP  WKY+
Sbjct:    1 MARMHSRDRGKSGSTRPPRVAPPSWVEYSPEEVESLVVDLAKQGYEPAMIGIKLRDEYGIPDVKLITGKKITEILEEHGLAPELPEDLLNLIRRAKRVREHLKRHPKDLHSKRGLQLIESKIHRLVKYYKRKGVLPEDWKYD 142          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_THEPD (30S ribosomal protein S15P/S13e OS=Thermofilum pendens (strain Hrk 5) GN=rps15p PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.577e-35
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 2
Query:   98 SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 508
            S+ KG S S  P +   P W+K+  ++VE+ +    +KG  PS IGVILRD +GI  VK+VTG  +L+IL+  GLAPEIPEDL +L+K+A+ +RKHLE + KD  SK  L L+ES+IHRL +YYK+   LPP WKYE
Sbjct:    4 SKEKGRSGSTRPPQLKKPEWVKMRPEEVEELVVSLYRKGYPPSMIGVILRDQYGIPMVKAVTGKSVLQILRERGLAPEIPEDLMNLMKRAIRVRKHLEEHPKDYHSKRGLQLIESKIHRLVKYYKREGILPPDWKYE 140          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METJA (30S ribosomal protein S15P/S13e OS=Methanocaldococcus jannaschii GN=rps15p PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 72/150 (48.00%), Postives = 102/150 (68.00%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M RMH+R +G S S  P ++  P W++ + + VE  + + AKKG   +QIG+ILRD++GI  VK +TG KI +I+K HGL P++PEDL +L+++AV +RKHLE++ KD  SK  L L+ES+I RL +YYK    LP  W+Y   TA  LV
Sbjct:    1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGIPDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKYYKSKGVLPADWRYTPETARLLV 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_META3 (30S ribosomal protein S15P/S13e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps15p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34
Identity = 72/150 (48.00%), Postives = 99/150 (66.00%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M R+HS  +G S S  P +   P+W  I++++ E+ I K AK+G   + IG+ILRDS+GI  VK VTG  + +I+K + + PEIPEDL++L+KKA+ +R HLE N KD  SK  L L ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:    1 MARLHSGKRGSSGSTRPLRTEVPAWANITAEETEEVIVKMAKEGKQSAMIGLILRDSYGIPDVKLVTGKSVAQIMKDNNVYPEIPEDLFNLMKKAINLRNHLEENTKDIHSKRGLQLTESKIRRLVKYYRNTKVLPAKWRYSPETARLLV 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_UNCMA (30S ribosomal protein S15P/S13e OS=Uncultured methanogenic archaeon RC-I GN=rps15p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 67/151 (44.37%), Postives = 96/151 (63.58%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            M +MH+R KG S S  P ++TPP+W  +S ++VE  + K   +  T SQ+G+ILRD +G+  +  VTG K+  ILK +G  P++PEDL +LIKKA+ + KHL+ N KD  +K  L L ES++ RL +YY  T  LP  W Y   TA  L++
Sbjct:    1 MAKMHTRRKGRSRSTRPVRKTPPAWFTMSKEEVEKLVVKTYGQNATTSQVGIILRDKYGVPDITQVTGKKVTAILKENGTGPKLPEDLVNLIKKAIRLHKHLDENHKDLHNKRALQLTESKVRRLVKYYHATGVLPMDWVYSPATAEILIS 151          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_STAMF (30S ribosomal protein S15P/S13e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 71/147 (48.30%), Postives = 99/147 (67.35%), Query Frame = 2
Query:  101 RGKGISASALPYKRTPPSWLKI--SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            R KG S S  P +  PP WLK+  S  D+E  + + AKKG TPS IG+ILRD +G+  VK VTG K+++IL+ HG+   +PEDL  L++KAV +R+HLE + KD  +K  L+ +ES+IHRL +YYK+  +LPP WKY    A  +V+
Sbjct:    5 RDKGQSHSTRPARAGPPRWLKLDMSPSDIELLVVELAKKGYTPSMIGIILRDQYGVPLVKQVTGKKLVQILEKHGIKLPVPEDLLFLMRKAVNLRRHLEEHPKDFHAKKGLLDLESKIHRLVKYYKRIGRLPPDWKYTPEQAKLIVS 151          
The following BLAST results are available for this feature:
BLAST of FC920954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_DICDI8.474e-5368.8740S ribosomal protein S13 OS=Dictyostelium discoid... [more]
RS13_MUSDO5.882e-4679.6540S ribosomal protein S13 (Fragment) OS=Musca dome... [more]
RS13_PIG7.950e-4376.6440S ribosomal protein S13 (Fragment) OS=Sus scrofa... [more]
RS15_PYRKO1.897e-3648.6730S ribosomal protein S15P/S13e OS=Pyrococcus koda... [more]
RS15_METKA2.477e-3651.4130S ribosomal protein S15P/S13e OS=Methanopyrus ka... [more]
RS15_THEPD3.577e-3552.5530S ribosomal protein S15P/S13e OS=Thermofilum pen... [more]
RS15_METJA6.101e-3548.0030S ribosomal protein S15P/S13e OS=Methanocaldococ... [more]
RS15_META32.318e-3448.0030S ribosomal protein S15P/S13e OS=Methanococcus a... [more]
RS15_UNCMA1.151e-3344.3730S ribosomal protein S15P/S13e OS=Uncultured meth... [more]
RS15_STAMF2.563e-3348.3030S ribosomal protein S15P/S13e OS=Staphylothermus... [more]

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Properties
Property NameValue
Genbank descriptionC32201C07EF RVDevelopN Citrus clementina cDNA clone C32201C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920954 ID=FC920954; Name=FC920954; organism=Citrus clementina; type=EST; length=682bp
GAAAGAAGCTAGGGTTTGGTGCGGCTTGTTGCAGTACAAAGTTGAACACA
AAGCTCACCGCTTCTCCTCCGTCGCCGTCACCATGGGTCGTATGCACAGT
CGCGGTAAGGGTATTTCTGCTTCAGCTTTGCCTTACAAGAGAACACCACC
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGCTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATACCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATACTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGAATTAGTCTT
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