FC920954
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS13_DICDI (40S ribosomal protein S13 OS=Dictyostelium discoideum GN=rps13 PE=3 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 8.474e-53 Identity = 104/151 (68.87%), Postives = 118/151 (78.15%), Query Frame = 2 Query: 83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535 MGRMHS GKGIS S+LPY R P +W K ++ +V + +CK AK+G TPS+IG LRDS G+AQVK+VTGSKILRILK +GLAP IPEDLYHLIKKAV I KHL+R RKD D KF L LVESRIHRL R Y+K L P WKYES ASTLVA Sbjct: 1 MGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA 151
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS13_MUSDO (40S ribosomal protein S13 (Fragment) OS=Musca domestica GN=RpS13 PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 5.882e-46 Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 2 Query: 197 KFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535 K KKGLTPS+IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK LPP WKYES+TAS LVA Sbjct: 2 KLGKKGLTPSKIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 114
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS13_PIG (40S ribosomal protein S13 (Fragment) OS=Sus scrofa GN=RPS13 PE=3 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 7.950e-43 Identity = 82/107 (76.64%), Postives = 98/107 (91.59%), Query Frame = 2 Query: 83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 403 MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRK Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_PYRKO (30S ribosomal protein S15P/S13e OS=Pyrococcus kodakaraensis GN=rps15p PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.897e-36 Identity = 73/150 (48.67%), Postives = 106/150 (70.67%), Query Frame = 2 Query: 83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532 M R+H+R +G S S P + PP+W++ ++++VE + K K+G + + IG ILRD +GI VK +TG KI +IL+ +GLAPEIPEDL LI++AV +RKHLE++ KDK S+ L L+ES+I RL +YY++T KLP W+Y+ A LV Sbjct: 1 MARIHARKRGKSGSKRPPRTAPPAWVEYTAEEVEALVVKLRKEGYSTAMIGTILRDQYGIPSVKLITGKKITKILEENGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDKHSRRGLQLIESKIRRLVKYYRRTGKLPAKWRYDPEQAKLLV 150
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METKA (30S ribosomal protein S15P/S13e OS=Methanopyrus kandleri GN=rps15p PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36 Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = 2 Query: 83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 508 M RMHSR +G S S P + PPSW++ S ++VE + AK+G P+ IG+ LRD +GI VK +TG KI IL+ HGLAPE+PEDL +LI++A +R+HL+R+ KD SK L L+ES+IHRL +YYK+ LP WKY+ Sbjct: 1 MARMHSRDRGKSGSTRPPRVAPPSWVEYSPEEVESLVVDLAKQGYEPAMIGIKLRDEYGIPDVKLITGKKITEILEEHGLAPELPEDLLNLIRRAKRVREHLKRHPKDLHSKRGLQLIESKIHRLVKYYKRKGVLPEDWKYD 142
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_THEPD (30S ribosomal protein S15P/S13e OS=Thermofilum pendens (strain Hrk 5) GN=rps15p PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.577e-35 Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 2 Query: 98 SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 508 S+ KG S S P + P W+K+ ++VE+ + +KG PS IGVILRD +GI VK+VTG +L+IL+ GLAPEIPEDL +L+K+A+ +RKHLE + KD SK L L+ES+IHRL +YYK+ LPP WKYE Sbjct: 4 SKEKGRSGSTRPPQLKKPEWVKMRPEEVEELVVSLYRKGYPPSMIGVILRDQYGIPMVKAVTGKSVLQILRERGLAPEIPEDLMNLMKRAIRVRKHLEEHPKDYHSKRGLQLIESKIHRLVKYYKREGILPPDWKYE 140
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METJA (30S ribosomal protein S15P/S13e OS=Methanocaldococcus jannaschii GN=rps15p PE=3 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35 Identity = 72/150 (48.00%), Postives = 102/150 (68.00%), Query Frame = 2 Query: 83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532 M RMH+R +G S S P ++ P W++ + + VE + + AKKG +QIG+ILRD++GI VK +TG KI +I+K HGL P++PEDL +L+++AV +RKHLE++ KD SK L L+ES+I RL +YYK LP W+Y TA LV Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGIPDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKYYKSKGVLPADWRYTPETARLLV 150
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_META3 (30S ribosomal protein S15P/S13e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps15p PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34 Identity = 72/150 (48.00%), Postives = 99/150 (66.00%), Query Frame = 2 Query: 83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532 M R+HS +G S S P + P+W I++++ E+ I K AK+G + IG+ILRDS+GI VK VTG + +I+K + + PEIPEDL++L+KKA+ +R HLE N KD SK L L ES+I RL +YY+ TK LP W+Y TA LV Sbjct: 1 MARLHSGKRGSSGSTRPLRTEVPAWANITAEETEEVIVKMAKEGKQSAMIGLILRDSYGIPDVKLVTGKSVAQIMKDNNVYPEIPEDLFNLMKKAINLRNHLEENTKDIHSKRGLQLTESKIRRLVKYYRNTKVLPAKWRYSPETARLLV 150
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_UNCMA (30S ribosomal protein S15P/S13e OS=Uncultured methanogenic archaeon RC-I GN=rps15p PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33 Identity = 67/151 (44.37%), Postives = 96/151 (63.58%), Query Frame = 2 Query: 83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535 M +MH+R KG S S P ++TPP+W +S ++VE + K + T SQ+G+ILRD +G+ + VTG K+ ILK +G P++PEDL +LIKKA+ + KHL+ N KD +K L L ES++ RL +YY T LP W Y TA L++ Sbjct: 1 MAKMHTRRKGRSRSTRPVRKTPPAWFTMSKEEVEKLVVKTYGQNATTSQVGIILRDKYGVPDITQVTGKKVTAILKENGTGPKLPEDLVNLIKKAIRLHKHLDENHKDLHNKRALQLTESKVRRLVKYYHATGVLPMDWVYSPATAEILIS 151
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_STAMF (30S ribosomal protein S15P/S13e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps15p PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33 Identity = 71/147 (48.30%), Postives = 99/147 (67.35%), Query Frame = 2 Query: 101 RGKGISASALPYKRTPPSWLKI--SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535 R KG S S P + PP WLK+ S D+E + + AKKG TPS IG+ILRD +G+ VK VTG K+++IL+ HG+ +PEDL L++KAV +R+HLE + KD +K L+ +ES+IHRL +YYK+ +LPP WKY A +V+ Sbjct: 5 RDKGQSHSTRPARAGPPRWLKLDMSPSDIELLVVELAKKGYTPSMIGIILRDQYGVPLVKQVTGKKLVQILEKHGIKLPVPEDLLFLMRKAVNLRRHLEEHPKDFHAKKGLLDLESKIHRLVKYYKRIGRLPPDWKYTPEQAKLIVS 151 The following BLAST results are available for this feature:
BLAST of FC920954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920954 ID=FC920954; Name=FC920954; organism=Citrus clementina; type=EST; length=682bpback to top |