FC920954

Overview
NameFC920954
Unique NameFC920954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10215 contig Ccv1_Contig10215:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_PYRAE (30S ribosomal protein S15P/S13e OS=Pyrobaculum aerophilum GN=rps15p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 67/141 (47.52%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  107 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 529
            KG S S  P   T P+W++ + ++VE  + + A++G  PSQIG+ILRD +GI  V+ +TG K+ +IL+ HG+  E+PEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  KLPP + Y     S L
Sbjct:    9 KGRSRSVRPAHPTVPTWIQYTPEEVEQLVVELARRGFQPSQIGLILRDQYGIPLVRPITGKKLTKILEEHGIKYELPEDLLNLIRRALRIRKHLEEHPKDMASRRGLQLVESKIHRLVKYYKRVGKLPPDFVYNPQALSHL 149          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METVS (30S ribosomal protein S15P/S13e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps15p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 69/150 (46.00%), Postives = 94/150 (62.67%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M R+HS  +G S S  P +   P W+ +S+++V+  I + AK G   + IG ILRD +GI  VK VTG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  SK  L L+ES+I RL +YYK TK LP  W+Y   TA  LV
Sbjct:    1 MARLHSGKRGSSGSTKPLRTEVPEWVSMSAEEVQAKIVEMAKDGNQSAIIGNILRDMYGIPNVKLVTGKSVSSIMKDAGFYSEVPEDLFNLMKKAINLRNHLENNPRDIHSKVGLNLIESKIRRLVKYYKGTKVLPATWRYSPQTARLLV 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_PYRHO (30S ribosomal protein S15P/S13e OS=Pyrococcus horikoshii GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 73/157 (46.50%), Postives = 97/157 (61.78%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M RMH+R +G S S  P +  PP WL  + +D+E+ + K  K+G + + IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LI++AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+   A  LV
Sbjct:    1 MARMHARKRGKSGSKRPPRTAPPIWLDYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPRDWRYDPEQAKLLV 157          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METHJ (30S ribosomal protein S15P/S13e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            M RMH+R +GIS S  PY+   P W     + +   I    ++G + ++IG+++RD +G+  VK  TG KI +IL+ + LA EIPEDL +LI+KA+ +RKHL  N++D  +K +L+L ES++ RL +YY  +KKLP  W Y+  TA  L++
Sbjct:    1 MARMHARRRGISRSVRPYRTQAPEWSNTDKEAIIKQIVDLRRQGSSTAEIGLVMRDKYGVPSVKLATGKKITQILRDNDLASEIPEDLRNLIEKALGMRKHLAENKRDIHNKRQLMLTESKVRRLVKYYVSSKKLPKDWVYKPETAEILLS 151          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_PYRAR (30S ribosomal protein S15P/S13e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 66/141 (46.81%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  107 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 529
            KG S S  P   T P+W++ + ++VE    + A++G  PSQIG++LRD +GI  VKS+TG K++++L+ HG+  EIPEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  +LP  + Y     S L
Sbjct:   12 KGRSGSVRPAHPTVPTWIQYTPEEVEQLAVELARRGFQPSQIGIVLRDQYGIPLVKSITGKKLVKVLEEHGIKYEIPEDLLNLIRRALRIRKHLEEHPKDMSSRRGLQLVESKIHRLIKYYKRVGRLPRDFVYNPQALSHL 152          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METM7 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M R+HS  +G S S  P +   P W+ +S++D+E  I + AK G   + IG ILRD +G+  VK VTG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:    1 MARLHSGKRGSSGSTRPLRTEVPEWVSMSAEDIEAKIVEMAKDGKQSAIIGNILRDMYGVPSVKLVTGKSVSSIMKEAGFYTEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPDTARLLV 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METMP (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M R+HS  +G S S  P +   P W+ +S++D+E  I + AK G   + IG ILRD +G+  VK +TG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:    1 MARLHSGKRGSSGSTRPLRTEVPEWVSMSAEDIEAKIVEMAKDGKQSAIIGNILRDMYGVPNVKLITGKSVSSIMKEAGFYAEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPETARLLV 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_NITMS (30S ribosomal protein S15P/S13e OS=Nitrosopumilus maritimus (strain SCM1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 64/146 (43.84%), Postives = 96/146 (65.75%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 520
            MGRMH+   G S S  P     PSW+  S  ++E+ + K++K GLTPSQIG+ LRD H I  +K +T   I  IL+ + L  E+PEDL +++KKAV +++HL+ N+ D+ +   L L+E+++HRL+ YYKK  ++P  WKY+S  A
Sbjct:    1 MGRMHTHRHGKSHSIRPATLRAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSIPLIKPITKKTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVYYKKIGRIPATWKYKSVVA 146          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_CENSY (30S ribosomal protein S15P/S13e OS=Cenarchaeum symbiosum GN=rps15p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31
Identity = 64/146 (43.84%), Postives = 95/146 (65.07%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 520
            MGR+HS   G S S  P     PSW++    +VED I K+AK+GL PSQIG  LRD H I   + +TG  + +I++ HG  PE+PEDL ++++KAV +++HL  N+ D+ +   L L+E+++HRL  YYK+  ++P  WKY+S  A
Sbjct:    1 MGRLHSHRHGKSHSIRPSSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAIPLTRPITGKSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVYYKRIGRIPKDWKYKSVVA 145          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_PYRCJ (30S ribosomal protein S15P/S13e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.117e-31
Identity = 66/141 (46.81%), Postives = 95/141 (67.38%), Query Frame = 2
Query:  107 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 529
            KG S+S  P   T P+W++ + ++VE    + A++G  PSQIG+ILRD +GI  VK +TG K+ +IL+ HG+  E+PEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  K+P  + Y     S L
Sbjct:    9 KGRSSSVRPPHPTVPTWIQYTPEEVEQLAVELARRGFPPSQIGIILRDQYGIPLVKPITGKKLTKILEEHGIKQELPEDLLNLIRRALRIRKHLEEHPKDMASRRGLQLVESKIHRLIKYYKRVGKIPQDFVYNPEALSHL 149          
The following BLAST results are available for this feature:
BLAST of FC920954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PYRAE1.407e-3147.5230S ribosomal protein S15P/S13e OS=Pyrobaculum aer... [more]
RS15_METVS1.407e-3146.0030S ribosomal protein S15P/S13e OS=Methanococcus v... [more]
RS15_PYRHO1.837e-3146.5030S ribosomal protein S15P/S13e OS=Pyrococcus hori... [more]
RS15_METHJ1.837e-3142.3830S ribosomal protein S15P/S13e OS=Methanospirillu... [more]
RS15_PYRAR2.399e-3146.8130S ribosomal protein S15P/S13e OS=Pyrobaculum ars... [more]
RS15_METM72.399e-3144.6730S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_METMP3.133e-3144.0030S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_NITMS4.092e-3143.8430S ribosomal protein S15P/S13e OS=Nitrosopumilus ... [more]
RS15_CENSY6.981e-3143.8430S ribosomal protein S15P/S13e OS=Cenarchaeum sym... [more]
RS15_PYRCJ9.117e-3146.8130S ribosomal protein S15P/S13e OS=Pyrobaculum cal... [more]

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Properties
Property NameValue
Genbank descriptionC32201C07EF RVDevelopN Citrus clementina cDNA clone C32201C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920954 ID=FC920954; Name=FC920954; organism=Citrus clementina; type=EST; length=682bp
GAAAGAAGCTAGGGTTTGGTGCGGCTTGTTGCAGTACAAAGTTGAACACA
AAGCTCACCGCTTCTCCTCCGTCGCCGTCACCATGGGTCGTATGCACAGT
CGCGGTAAGGGTATTTCTGCTTCAGCTTTGCCTTACAAGAGAACACCACC
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGCTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATACCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATACTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGAATTAGTCTT
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