FC920954

Overview
NameFC920954
Unique NameFC920954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10215 contig Ccv1_Contig10215:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METTH (30S ribosomal protein S15P/S13e OS=Methanobacterium thermoautotrophicum GN=rps15p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 62/128 (48.44%), Postives = 89/128 (69.53%), Query Frame = 2
Query:  149 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            P W++ S++++ED I K  ++G + S+IG+ILRD HGI  VK+VTG KI +IL+ H + PE PEDL +LI+KAV IR HL+ + KD  ++  L +VES+I RL RYY +   LP  W+Y+   A+ LV
Sbjct:    6 PDWVEYSNEEIEDLIVKLYREGNSTSKIGIILRDQHGIPSVKAVTGLKITQILEKHEMKPEYPEDLMNLIRKAVNIRDHLKEHPKDLHTRRGLQIVESKIRRLVRYYVREGVLPEGWRYDPQKAALLV 133          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METST (30S ribosomal protein S15P/S13e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps15p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.531e-28
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 2
Query:  149 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            P W++ S +++E+ I K  K+G + SQIG+ LRD HGI   K+V G KI  ILK +G   E PEDL +LIK+AV IR+HLE N KD  +K  LI +ES+I RL +YY +   LP  W+Y+  TA+ LV
Sbjct:    5 PEWVEQSPEEIEELIVKLHKEGQSTSQIGITLRDQHGIPNTKAVLGEKITDILKRNGTDFEYPEDLLNLIKRAVNIREHLEENPKDIHTKRGLIKIESKIRRLVKYYTRNNVLPEGWRYDPKTAALLV 132          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METS3 (30S ribosomal protein S15P/S13e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps15p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.102e-27
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 2
Query:  149 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            P W+  S +++E+ I KF K+G + S+IG+ILRD +GI  VK VTG +I +ILK +  A + PEDL +LIK+AV IR HL  N KD  SK  L ++ESRI RLA YY     LP  W+Y    A+ LV
Sbjct:    4 PEWVTYSDEEIEEMILKFNKEGKSTSEIGIILRDQYGIPSVKEVTGERITQILKRNDQAGKYPEDLMNLIKRAVNIRDHLAENPKDLHSKRGLTIIESRIRRLASYYVNEGALPEGWRYNPKEAALLV 131          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METB6 (30S ribosomal protein S15P/S13e OS=Methanoregula boonei (strain 6A8) GN=rps15p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 63/151 (41.72%), Postives = 91/151 (60.26%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            M RMH+R +G S+S  P +   P+W       +E  I    K+G + S IG++LRD +G+  VK VTG  I  IL  + ++ EIPEDL  L+ KA+ +RKHL  N KD  +K +L LVE++I RL +YY  T+KLP  + Y+   A  L++
Sbjct:    1 MARMHARRRGKSSSVRPARNEAPAWSNTDKAAIEKLIVDLRKEGTSASMIGLVLRDRYGVPDVKMVTGKSIGDILTENKVSSEIPEDLRDLMVKALGLRKHLGENPKDLHNKRQLHLVEAKIRRLVKYYIGTRKLPAGFTYKPENAEILLS 151          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_NANEQ (30S ribosomal protein S15P/S13e OS=Nanoarchaeum equitans GN=rps15p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26
Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = 2
Query:   95 HSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 505
            H R  G S S  P + T P W     + VE+ I + AK+G +P+ IG+ILRD +GI  V+   G  +   L+  GL P+IP DL +L+K+A  + KH+E N +D  +K    L+ S+IHRLA+YYK+   LP  WKY
Sbjct:    7 HKRYHGQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQYGIPDVRLYIGKSLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLAKYYKRKGVLPKDWKY 143          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METTP (30S ribosomal protein S15P/S13e OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps15p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 61/167 (36.53%), Postives = 90/167 (53.89%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLER----------------NRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            M RMHSR KG S S  P     P W  +S +++E  I    ++G++ + IG+ LRD +G+  +K + G  +   L+     PEIPEDL +L++KA+ +R+HL R                  KD  +K  L LVES+I RL RYYK+  +LP  W+Y   TA   ++
Sbjct:    1 MARMHSRKKGSSGSRPPVVDKLPEWCDVSKEELEKTIMTLHERGMSNAMIGLTLRDQYGVPNLKLILGKSLSSFLRDRNALPEIPEDLSNLMRKALRLRRHLLRAQPRGTVSDTSISRLPRTKDIHNKRALQLVESKIRRLVRYYKQVGRLPATWEYRPETAEIQIS 167          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_PICTO (30S ribosomal protein S15P/S13e OS=Picrophilus torridus GN=rps15p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 55/142 (38.73%), Postives = 85/142 (59.86%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 508
            M RMH+R +G S S     R  PSW++ S  ++++ I K  K+G+T S IG+ LRD + I   + V   K+ ++LK + L  ++PEDL  LI++     KHL  N+ D ++K +  L+ S++ RL RYYK+T +LP  W  E
Sbjct:    1 MARMHTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAIPGTRPVLHMKLGQVLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRTSRLPQDWSLE 142          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_HALSA (30S ribosomal protein S15P/S13e OS=Halobacterium salinarium GN=rps15p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 59/154 (38.31%), Postives = 87/154 (56.49%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M RMH+R +G S S  P    PP W  +    +E+ + + A++G  PSQIG+ LRD       +  VK  TG K+  IL+AH   PE+PED  +L++KAV + +H+E N +D  +K  L   +S+I RLA YY +  KL   + Y   TA  ++
Sbjct:    1 MARMHTRRRGSSGSDRPTADEPPEWSDVDEDAIEERVVELAEQGHDPSQIGLKLRDEGVQGTPVPDVKLATGKKVTEILEAHDAEPELPEDFRNLLEKAVRLHEHVEANGQDHQNKRALQNTQSKIRRLADYY-RGDKLDEEFAYSYETAREII 153          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_THEAC (30S ribosomal protein S15P/S13e OS=Thermoplasma acidophilum GN=rps15p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 57/139 (41.01%), Postives = 84/139 (60.43%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 499
            M RMH+R +G S S   Y    PSW++ S  +V + I    K G+ PS IG+ LRD +GI  VK+V G K+ ++L   GL  ++PEDL +LIK+   + KH+E N KD+ +K    L+ +++ RL +YYK+T  L   W
Sbjct:    1 MARMHTRKRGRSGSKKVYG-VQPSWIQYSKDEVINTIVNLKKSGVPPSVIGIKLRDQYGIPTVKAVLGMKLGKVLSEKGLKDDVPEDLGNLIKRYNNVAKHVELNPKDQANKRGRDLIMAKMLRLVKYYKRTGVLDEKW 138          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_HALWD (30S ribosomal protein S15P/S13e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps15p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 472
            M RMH+R +G S S  P    PP W  I +  +E+ + + A++G  PSQIG+ LRD       I  VK  T  K+  IL+ H   PE+PEDL +L+++A+ +R+H++ N +D  +K  L   ES+I RLA YY+
Sbjct:    1 MARMHTRRRGSSGSDKPVADDPPEWSDIDADAIEERVVELAEQGHEPSQIGMKLRDEGVKGTPIPDVKLATDKKVTTILEEHNAKPELPEDLRNLMERAIRLRRHVDENGQDMQNKRALQNTESKIRRLASYYR 134          
The following BLAST results are available for this feature:
BLAST of FC920954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_METTH1.901e-2848.4430S ribosomal protein S15P/S13e OS=Methanobacteriu... [more]
RS15_METST5.531e-2849.2230S ribosomal protein S15P/S13e OS=Methanosphaera ... [more]
RS15_METS32.102e-2749.2230S ribosomal protein S15P/S13e OS=Methanobrevibac... [more]
RS15_METB63.035e-2641.7230S ribosomal protein S15P/S13e OS=Methanoregula b... [more]
RS15_NANEQ5.177e-2642.3430S ribosomal protein S15P/S13e OS=Nanoarchaeum eq... [more]
RS15_METTP7.476e-2536.5330S ribosomal protein S15P/S13e OS=Methanosaeta th... [more]
RS15_PICTO2.405e-2338.7330S ribosomal protein S15P/S13e OS=Picrophilus tor... [more]
RS15_HALSA5.357e-2338.3130S ribosomal protein S15P/S13e OS=Halobacterium s... [more]
RS15_THEAC1.559e-2241.0130S ribosomal protein S15P/S13e OS=Thermoplasma ac... [more]
RS15_HALWD3.473e-2240.3030S ribosomal protein S15P/S13e OS=Haloquadratum w... [more]

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Properties
Property NameValue
Genbank descriptionC32201C07EF RVDevelopN Citrus clementina cDNA clone C32201C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920954 ID=FC920954; Name=FC920954; organism=Citrus clementina; type=EST; length=682bp
GAAAGAAGCTAGGGTTTGGTGCGGCTTGTTGCAGTACAAAGTTGAACACA
AAGCTCACCGCTTCTCCTCCGTCGCCGTCACCATGGGTCGTATGCACAGT
CGCGGTAAGGGTATTTCTGCTTCAGCTTTGCCTTACAAGAGAACACCACC
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGCTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATACCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATACTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGAATTAGTCTT
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