FC923114

Overview
NameFC923114
Unique NameFC923114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14233 contig Ccv1_Contig14233:18..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923114 vs. ExPASy Swiss-Prot
Match: RL33B_SCHPO (60S ribosomal protein L33-B OS=Schizosaccharomyces pombe GN=rpl33b PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 2
Query:   92 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 397
            RLYV+   L ++RSK   +P TS++++EG ++KEE  +Y GKR+ Y+YK+     GS  R IWG +AR HGNSG VRA+F  NLP K+ G  +RV +YPSNI
Sbjct:    7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108          
BLAST of FC923114 vs. ExPASy Swiss-Prot
Match: RL35A_CAEEL (60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 2
Query:   92 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKA--KTKKNG----SHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 397
            RLYV+    G+KR    Q  +TSL+++EGV  KE+  +Y GKR+ Y+YKA  KT K G    +  R IWGK+ R HGN+G VRAKF  N+PP ++G R+RV +YPSNI
Sbjct:   17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124          
BLAST of FC923114 vs. ExPASy Swiss-Prot
Match: RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   92 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 397
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of FC923114 vs. ExPASy Swiss-Prot
Match: RL35A_MOUSE (60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   92 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 397
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of FC923114 vs. ExPASy Swiss-Prot
Match: RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   92 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 397
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of FC923114 vs. ExPASy Swiss-Prot
Match: RL35A_MACFA (60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   92 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 397
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of FC923114 vs. ExPASy Swiss-Prot
Match: RL35A_HUMAN (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   92 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 397
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of FC923114 vs. ExPASy Swiss-Prot
Match: RL35A_BOVIN (60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.194e-24
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   92 RLYVRGTILGYKRSKSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 397
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGK+ R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
The following BLAST results are available for this feature:
BLAST of FC923114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL33B_SCHPO3.385e-2550.9860S ribosomal protein L33-B OS=Schizosaccharomyces... [more]
RL35A_CAEEL7.541e-2550.9360S ribosomal protein L35a OS=Caenorhabditis elega... [more]
RL35A_RAT1.286e-2450.4760S ribosomal protein L35a OS=Rattus norvegicus GN... [more]
RL35A_MOUSE1.286e-2450.4760S ribosomal protein L35a OS=Mus musculus GN=Rpl3... [more]
RL35A_PONAB1.680e-2450.4760S ribosomal protein L35a OS=Pongo abelii GN=RPL3... [more]
RL35A_MACFA1.680e-2450.4760S ribosomal protein L35a OS=Macaca fascicularis ... [more]
RL35A_HUMAN1.680e-2450.4760S ribosomal protein L35a OS=Homo sapiens GN=RPL3... [more]
RL35A_BOVIN2.194e-2449.5360S ribosomal protein L35a OS=Bos taurus GN=RPL35A... [more]

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Properties
Property NameValue
Genbank descriptionC31701C03EF StrClemenN Citrus clementina cDNA clone C31701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923114 ID=FC923114; Name=FC923114; organism=Citrus clementina; type=EST; length=686bp
GAGGGTTTCTTCTTTGCAGACTCAGGCGGCAAGCAGGTGGGCAGAGCTTC
AATCATAAACAATGGTGAAGGGCAGGCAAGGCGAGCGCGTCAGACTCTAT
GTTCGAGGAACAATTCTGGGATACAAAAGGTCAAAATCAAACCAATATCC
AAACACATCACTGATTCAGGTCGAGGGAGTGAACACAAAGGAAGAGGTGG
CGTGGTACTGCGGCAAGCGTTTGGCTTACATTTACAAGGCCAAGACTAAG
AAGAACGGATCCCACTACCGTTGCATTTGGGGAAAAGTTGCCAGATCTCA
CGGTAACAGCGGCGTCGTTCGCGCCAAGTTCAAGTCCAATCTCCCTCCCA
AATCCATGGGAGATAGAGTTAGGGTTTTCATGTATCCCAGCAACATATGA
GCAGCATGGTTCGAGAAGCTACTCGATCAACAAGTGAAATTTACCTTCTG
AATTTGGGATTTATTCGCTTAACATTTATGTTGCAAGATTTTGGAGTTGG
GAGTTATACTGGCTAGATGTTTTGGCTTTTGCTACTGTTAGTGTGGATTT
TGGAACATTAATTTTAATGTTAATGCTTAGTTTTTTGTTTTGAATTTTTC
TTATCATGATATGAAGTTACTTTATCATTTGCCTTCCTTTTGGTGCATCT
ATAAATGCTGTATGTCTCTAAAACTGCATATTTAAT
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