FC924872

Overview
NameFC924872
Unique NameFC924872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig855 contig Ccv1_Contig855:37..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS11_MACFA (40S ribosomal protein S11 OS=Macaca fascicularis GN=RPS11 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 2.610e-47
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 2
Query:   68 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 526
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS11_HUMAN (40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 2.610e-47
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 2
Query:   68 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 526
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS11_BOVIN (40S ribosomal protein S11 OS=Bos taurus GN=RPS11 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 2.610e-47
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 2
Query:   68 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 526
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS11_DICDI (40S ribosomal protein S11 OS=Dictyostelium discoideum GN=rps11 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.692e-46
Identity = 94/153 (61.44%), Postives = 111/153 (72.55%), Query Frame = 2
Query:   68 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 526
            Q EKAF KQ   F +               R++K+IGLG++TP++AIEGTYIDKKCPFT  VSIRG IL GT  S KM RT++VRRNYLH++KKY R+EKRHSNIPAH+SP F VKEGD V IGQCRPLSKTVRFNV+K   + +S    KAF
Sbjct:    5 QAEKAFQKQQVSFKNRFQLKASKGKEGI--RYYKNIGLGYRTPKDAIEGTYIDKKCPFTSDVSIRGAILRGTVISTKMRRTLVVRRNYLHYIKKYNRFEKRHSNIPAHVSPAFNVKEGDSVTIGQCRPLSKTVRFNVIKHDISAASKKQFKAF 155          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS11_YEAST (40S ribosomal protein S11 OS=Saccharomyces cerevisiae GN=RPS11A PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.097e-45
Identity = 89/153 (58.17%), Postives = 113/153 (73.86%), Query Frame = 2
Query:   68 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 526
            Q+E+AF KQP +F +               R++K+ GLGFKTP+ AIEG+YIDKKCPFTG VSIRG+IL GT  S KM+RTI++RR YLH++ KY RYEKRH N+P H+SP FRV+ GD V +GQCRP+SKTVRFNV+KV  + ++G A K F
Sbjct:    8 QSERAFQKQPHIFNNPKVKTSKRT-----KRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV--SAAAGKANKQF 153          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS11_SCHPO (40S ribosomal protein S11 OS=Schizosaccharomyces pombe GN=rps11a PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.097e-45
Identity = 87/141 (61.70%), Postives = 105/141 (74.47%), Query Frame = 2
Query:   68 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490
            Q+E+AF KQP +F ++              R++K +GLGFKTP EAI G Y+DKKCPF G VSIRGRIL GT  S KM+RTII+RR YLHF+ KY RYEKRH N+ AH+SP FR+ EGD V +GQCRPLSKTVRFNVL+V+
Sbjct:    8 QSERAFQKQPHIFQNAKKGAG--------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEGDVVTVGQCRPLSKTVRFNVLRVV 140          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS11_DROPS (40S ribosomal protein S11 OS=Drosophila pseudoobscura pseudoobscura GN=RpS11 PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.135e-42
Identity = 92/157 (58.60%), Postives = 109/157 (69.43%), Query Frame = 2
Query:   59 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 526
            MA+Q E+AF KQ  V L+               R ++ +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G     KM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:    1 MADQNERAFQKQFGVNLNRKVKPGVTKKKIL--RRYRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILIGVVRKTKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPAFRDVEHGDIVTIGECRPLSKTVRFNVLKV---NKGQGAKKSF 152          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS11_DROYA (40S ribosomal protein S11 OS=Drosophila yakuba GN=RpS11 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.482e-42
Identity = 93/157 (59.24%), Postives = 109/157 (69.43%), Query Frame = 2
Query:   59 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 526
            MA+Q E+AF KQ  V L+               R  + +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G    AKM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:    1 MADQNERAFQKQFGVNLNRKVKPGITKKKLL--RRSRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV---SKGQGAKKSF 152          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS11_DROME (40S ribosomal protein S11 OS=Drosophila melanogaster GN=RpS11 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.482e-42
Identity = 93/157 (59.24%), Postives = 109/157 (69.43%), Query Frame = 2
Query:   59 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 526
            MA+Q E+AF KQ  V L+               R  + +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G    AKM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:    1 MADQNERAFQKQFGVNLNRKVKPGITKKKLL--RRSRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV---SKGQGAKKSF 152          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS11_ANOGA (40S ribosomal protein S11 OS=Anopheles gambiae GN=RpS11 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.312e-42
Identity = 82/125 (65.60%), Postives = 98/125 (78.40%), Query Frame = 2
Query:  158 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 529
            R   SIGLGFKTP+EAI GTYIDKKCPFTG +SIRGRIL G     KM+RTI++RR+YLHF++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV       G+KK F+
Sbjct:   30 RMHHSIGLGFKTPKEAITGTYIDKKCPFTGHISIRGRILTGVVRKMKMHRTIVIRRDYLHFIRKYDRFEKRHRNMSVHLSPCFRDVEAGDIVTVGECRPLSKTVRFNVLKV---SKMAGSKKKFS 151          
The following BLAST results are available for this feature:
BLAST of FC924872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_MACFA2.610e-4759.7440S ribosomal protein S11 OS=Macaca fascicularis G... [more]
RS11_HUMAN2.610e-4759.7440S ribosomal protein S11 OS=Homo sapiens GN=RPS11... [more]
RS11_BOVIN2.610e-4759.7440S ribosomal protein S11 OS=Bos taurus GN=RPS11 P... [more]
RS11_DICDI1.692e-4661.4440S ribosomal protein S11 OS=Dictyostelium discoid... [more]
RS11_YEAST1.097e-4558.1740S ribosomal protein S11 OS=Saccharomyces cerevis... [more]
RS11_SCHPO1.097e-4561.7040S ribosomal protein S11 OS=Schizosaccharomyces p... [more]
RS11_DROPS1.135e-4258.6040S ribosomal protein S11 OS=Drosophila pseudoobsc... [more]
RS11_DROYA1.482e-4259.2440S ribosomal protein S11 OS=Drosophila yakuba GN=... [more]
RS11_DROME1.482e-4259.2440S ribosomal protein S11 OS=Drosophila melanogast... [more]
RS11_ANOGA4.312e-4265.6040S ribosomal protein S11 OS=Anopheles gambiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM03FM1 TF Citrus clementina cDNA clone KN0AAP6YM03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924872 ID=FC924872; Name=FC924872; organism=Citrus clementina; type=EST; length=624bp
TAGCCACCTCCGCCCAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAA
ATCCAGCCATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAG
GTGTTTCTCAGCTCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGG
AGGGAATCGATTCTGGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAG
AGGCAATTGAAGGGACTTACATTGATAAGAAGTGTCCGTTCACCGGCACT
GTTTCCATCAGGGGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGAT
GAACAGAACCATCATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAAT
ATCAGAGGTATGAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCT
TGTTTCCGTGTGAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCC
TTTGTCAAAGACGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGT
CTTCTGGTGGTGCAAAGAAGGCATTCACGGCGATGTGAGTTGGAGTCGGC
TGTTTCCAACATTAAATTTTTGCTACTTTTGTTCCATGGGACTTTGTTAT
TTGGATTTTTGCATTGGGAATTAA
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