FC924872

Overview
NameFC924872
Unique NameFC924872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig855 contig Ccv1_Contig855:37..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METKA (30S ribosomal protein S17P OS=Methanopyrus kandleri GN=rps17p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.855e-23
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  158 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490
            R  K IGLG K PR   +    D  CPF G + +RG IL G   S +M++T+IV R Y  + +KY+R+E+R S IPAH  PC   +EGD V I +CRPLSKT  F V++V+
Sbjct:    6 RMAKDIGLGVKPPRRECD----DPNCPFHGNLRVRGMILEGVVVSDRMDKTVIVEREYYRYDRKYERWERRRSRIPAHNPPCIDAQEGDKVRIAECRPLSKTKSFVVIEVL 112          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_UNCMA (30S ribosomal protein S17P OS=Uncultured methanogenic archaeon RC-I GN=rps17p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.225e-22
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487
            K IGL  K P+        D +CPF G++++RG+I  GT  SAKM+++++V R YL    KY RYEKR S + AH  PC   KEGD V+I +CRPLSKT  F V++V
Sbjct:    3 KDIGLNVKAPKTECN----DPQCPFHGSLAVRGQIFEGTVVSAKMSKSVVVSREYLKRDLKYDRYEKRRSKLHAHNPPCINAKEGDKVVIAECRPLSKTKTFVVVEV 105          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METLZ (30S ribosomal protein S17P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps17p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.455e-22
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490
            K+IGL    P +  +    D  CPF G++ +RG+++ G   S +M  T++V RN+LH V+KY RYEKR S I AH++PC   K GD V I +CRPL+KT  + V++VI
Sbjct:    3 KNIGLNVAVPEKDCD----DVNCPFHGSLPVRGQVITGKVVSERMQGTVVVERNFLHKVQKYDRYEKRSSKIHAHMAPCLNAKIGDEVKIAECRPLNKTTSYVVVEVI 106          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METMJ (30S ribosomal protein S17P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps17p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.104e-21
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490
            ++IGL    P    E    D  CPF GT+ +RG+++ G   S +MN T++V R +LH+VKKY+RYEKR S   AH +PC     GD V I +CRPLSKT  F V++V+
Sbjct:    3 RNIGLDVPIPETECE----DVNCPFHGTLPVRGQVITGKVVSDRMNGTVVVEREFLHYVKKYKRYEKRRSRYHAHSTPCINAGVGDVVRIAECRPLSKTTNFVVVEVM 106          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METHJ (30S ribosomal protein S17P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps17p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.104e-21
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487
            + IGL    P +       D  CPF GT+ +RG+++ G   S KM  +++V+R+YLHFV+KYQRYEKR S I AH  PC   + GD V I +CRPLSKT  + V++V
Sbjct:    3 RDIGLNVPVPEKDCS----DVNCPFHGTLPVRGQVITGKVVSDKMTGSVVVQRDYLHFVRKYQRYEKRSSKIHAHNPPCLHARVGDMVSIAECRPLSKTKTYVVVEV 105          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METBF (30S ribosomal protein S17P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps17p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.104e-21
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484
            + IGL    P E    +Y    CPF GT+S+RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S + AH  PC   K GD V I +CR +SKT  + V+K
Sbjct:    3 RDIGLNIPAPSEECNDSY----CPFHGTLSVRGQILVGTVVSSKMDNTVVIERQYMKLVPKYQRYEKRRSKVHAHNPPCISAKVGDIVTIAECRRISKTKSYVVVK 104          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METMA (30S ribosomal protein S17P OS=Methanosarcina mazei GN=rps17p PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.442e-21
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484
            + IGL    P E  +  Y    CPF GT+ +RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S I AH   C   K GD V I +CRP+SKT  F V+K
Sbjct:    3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIVECRPISKTKSFVVVK 104          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METAC (30S ribosomal protein S17P OS=Methanosarcina acetivorans GN=rps17p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.442e-21
Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484
            + IGL    P E  +  Y    CPF GT+ +RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S I AH   C   K GD V I +CRP+SKT  + V+K
Sbjct:    3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIAECRPISKTKSYVVVK 104          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METPE (30S ribosomal protein S17P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps17p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.884e-21
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487
            ++IGL  + P E  +    D  CPF G +S+RG+++ G   S +M  TI+V R+YLH+V+KY+RYEKR S + AH  PC +VK GD V I +CRP+SK+  F V++V
Sbjct:    3 RNIGLNVQPPVEECQ----DVNCPFHGNLSVRGQVITGKVVSDRMLGTIVVGRDYLHYVRKYKRYEKRSSKLHAHNPPCLQVKVGDIVKIAECRPISKSTTFVVVEV 105          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METB6 (30S ribosomal protein S17P OS=Methanoregula boonei (strain 6A8) GN=rps17p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487
            ++IGL  + P++  +    D  CPF GT+ +RG+++ G   S KM  T++V R+YLH+V+KY RYEKR S + AH  PC + K GD V I +CRPLSK+  + V++V
Sbjct:    3 QNIGLNVQPPKQECK----DVNCPFHGTLPVRGQVITGKVVSDKMMGTVVVARDYLHYVRKYNRYEKRISKLHAHNPPCIQAKVGDLVKIAECRPLSKSTTYVVVEV 105          
The following BLAST results are available for this feature:
BLAST of FC924872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS17_METKA5.855e-2347.7530S ribosomal protein S17P OS=Methanopyrus kandler... [more]
RS17_UNCMA2.225e-2248.6030S ribosomal protein S17P OS=Uncultured methanoge... [more]
RS17_METLZ8.455e-2245.3730S ribosomal protein S17P OS=Methanocorpusculum l... [more]
RS17_METMJ1.104e-2146.3030S ribosomal protein S17P OS=Methanoculleus maris... [more]
RS17_METHJ1.104e-2146.7330S ribosomal protein S17P OS=Methanospirillum hun... [more]
RS17_METBF1.104e-2147.1730S ribosomal protein S17P OS=Methanosarcina barke... [more]
RS17_METMA1.442e-2148.1130S ribosomal protein S17P OS=Methanosarcina mazei... [more]
RS17_METAC1.442e-2147.1730S ribosomal protein S17P OS=Methanosarcina aceti... [more]
RS17_METPE1.884e-2146.7330S ribosomal protein S17P OS=Methanosphaerula pal... [more]
RS17_METB65.480e-2144.8630S ribosomal protein S17P OS=Methanoregula boonei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM03FM1 TF Citrus clementina cDNA clone KN0AAP6YM03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924872 ID=FC924872; Name=FC924872; organism=Citrus clementina; type=EST; length=624bp
TAGCCACCTCCGCCCAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAA
ATCCAGCCATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAG
GTGTTTCTCAGCTCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGG
AGGGAATCGATTCTGGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAG
AGGCAATTGAAGGGACTTACATTGATAAGAAGTGTCCGTTCACCGGCACT
GTTTCCATCAGGGGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGAT
GAACAGAACCATCATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAAT
ATCAGAGGTATGAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCT
TGTTTCCGTGTGAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCC
TTTGTCAAAGACGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGT
CTTCTGGTGGTGCAAAGAAGGCATTCACGGCGATGTGAGTTGGAGTCGGC
TGTTTCCAACATTAAATTTTTGCTACTTTTGTTCCATGGGACTTTGTTAT
TTGGATTTTTGCATTGGGAATTAA
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