FC924872

Overview
NameFC924872
Unique NameFC924872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig855 contig Ccv1_Contig855:37..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_HALSA (30S ribosomal protein S17P OS=Halobacterium salinarium GN=rps17p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.350e-19
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS 505
            +IGL    P    EGT  D+ CPF G +S+RG++L G   S  M +T++V R Y  FV KY RY KR S +PAH   CF +  GD V I + RPLSKT    V+++   G +
Sbjct:    2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLSKTKSHVVVEITDGGDA 109          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_HALS3 (30S ribosomal protein S17P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps17p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.350e-19
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS 505
            +IGL    P    EGT  D+ CPF G +S+RG++L G   S  M +T++V R Y  FV KY RY KR S +PAH   CF +  GD V I + RPLSKT    V+++   G +
Sbjct:    2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLSKTKSHVVVEITDGGDA 109          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PYRHO (30S ribosomal protein S17P OS=Pyrococcus horikoshii GN=rps17p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490
            + IGL  + P E  +    D KCP+ G + I GR+  G   S K  +T+ V R Y H++KKY+RYE R S I AH  PC   K GD V+I + RPLSKT  F V+ V+
Sbjct:    6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVISDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PYRAB (30S ribosomal protein S17P OS=Pyrococcus abyssi GN=rps17p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490
            + IGL  + P E  +    D KCP+ G + I GR+  G   S K  +T+ V R Y H++KKY+RYE R S I AH  PC   K GD V+I + RPLSKT  F V+ V+
Sbjct:    6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METBU (30S ribosomal protein S17P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps17p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484
            K IGL    P +  +    D  CPF G + +RG+I  GT  SAKM+RT+++++     + KYQRYEKR S I AH  PC   K GD V I +CRPLSKT  + V+K
Sbjct:    3 KDIGLDIPEPTKECD----DINCPFHGELPVRGQIHVGTVVSAKMDRTVVIQQRREKLINKYQRYEKRQSKIHAHNPPCIDAKVGDIVTIAECRPLSKTKSYVVVK 104          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_SULSO (30S ribosomal protein S17P OS=Sulfolobus solfataricus GN=rps17p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  224 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVL 481
            D+ CP+ G++ +RG  L G     +  +  ++ R YL++  KY+RYE+R S I AH+ PC  V+EGD VIIG+CRPLSK++ F VL
Sbjct:   25 DEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLSKSISFVVL 110          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METTH (30S ribosomal protein S17P OS=Methanobacterium thermoautotrophicum GN=rps17p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  224 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487
            D  CPF G + +RG+IL GT  S K  RT+ V R++  F++KY+RYEKR S I AH   C  V+ GD V I +CRPLSKT  F V++V
Sbjct:   15 DPNCPFHGDLPLRGQILEGTVVSDKAERTVTVERSFYKFIRKYERYEKRKSKIKAHKPDCIDVRVGDTVKIAECRPLSKTKNFVVVEV 102          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METST (30S ribosomal protein S17P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps17p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  173 IGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487
            +G+  K P +       D  CPF G +S+RG+++ GT  S K +RTI V R++  ++ K++RYEKR+S I AH   C  VK GD V I +CR LSKT  F +++V
Sbjct:    2 VGINVKQPEKECH----DPNCPFHGELSVRGQVIEGTVTSDKADRTITVERSFYKYINKFERYEKRNSKIKAHKPDCLDVKVGDSVKIAECRQLSKTKHFVLVEV 102          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_AERPE (30S ribosomal protein S17P OS=Aeropyrum pernix GN=rps17p PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  224 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487
            D  CP+ GT+ +RG +L G    A+  R ++V+  YL++ KKY RYE+R   I AH+  C  VKEGD V+IG+  P+SKTV+F VL V
Sbjct:   24 DPNCPWHGTLRVRGVLLEGVVAKARARRMVVVQHVYLYYDKKYNRYERRSKKIHAHLPDCISVKEGDVVVIGETMPISKTVKFTVLGV 111          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_SULAC (30S ribosomal protein S17P OS=Sulfolobus acidocaldarius GN=rps17p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.325e-18
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  167 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487
            K++G+ G   P +  +  Y    CP+ G++ +RG +L G    A+ NRT  V R Y+ +  KY+RYE+R S I  HI  C  VKEGD+VIIG+ RP++K++ F +L V
Sbjct:    9 KNVGIEGVSAPSKTCDDEY----CPYHGSLKVRGIVLEGKLIRARANRTGTVEREYIFYDSKYKRYERRRSRIHVHIPSCLEVKEGDNVIIGESRPIAKSISFVILGV 112          
The following BLAST results are available for this feature:
BLAST of FC924872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS17_HALSA1.350e-1943.7530S ribosomal protein S17P OS=Halobacterium salina... [more]
RS17_HALS31.350e-1943.7530S ribosomal protein S17P OS=Halobacterium salina... [more]
RS17_PYRHO3.007e-1944.4430S ribosomal protein S17P OS=Pyrococcus horikoshi... [more]
RS17_PYRAB3.007e-1944.4430S ribosomal protein S17P OS=Pyrococcus abyssi GN... [more]
RS17_METBU3.007e-1946.2330S ribosomal protein S17P OS=Methanococcoides bur... [more]
RS17_SULSO1.143e-1846.5130S ribosomal protein S17P OS=Sulfolobus solfatari... [more]
RS17_METTH1.143e-1851.1430S ribosomal protein S17P OS=Methanobacterium the... [more]
RS17_METST2.546e-1842.8630S ribosomal protein S17P OS=Methanosphaera stadt... [more]
RS17_AERPE2.546e-1847.7330S ribosomal protein S17P OS=Aeropyrum pernix GN=... [more]
RS17_SULAC3.325e-1841.6730S ribosomal protein S17P OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM03FM1 TF Citrus clementina cDNA clone KN0AAP6YM03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924872 ID=FC924872; Name=FC924872; organism=Citrus clementina; type=EST; length=624bp
TAGCCACCTCCGCCCAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAA
ATCCAGCCATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAG
GTGTTTCTCAGCTCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGG
AGGGAATCGATTCTGGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAG
AGGCAATTGAAGGGACTTACATTGATAAGAAGTGTCCGTTCACCGGCACT
GTTTCCATCAGGGGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGAT
GAACAGAACCATCATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAAT
ATCAGAGGTATGAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCT
TGTTTCCGTGTGAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCC
TTTGTCAAAGACGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGT
CTTCTGGTGGTGCAAAGAAGGCATTCACGGCGATGTGAGTTGGAGTCGGC
TGTTTCCAACATTAAATTTTTGCTACTTTTGTTCCATGGGACTTTGTTAT
TTGGATTTTTGCATTGGGAATTAA
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