FC924872

Overview
NameFC924872
Unique NameFC924872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig855 contig Ccv1_Contig855:37..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_SULTO (30S ribosomal protein S17P OS=Sulfolobus tokodaii GN=rps17p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 2
Query:  167 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVL 481
            K+IG+ G   P +  +    D  CPF G + +RG IL G     +  +T +V R+YL +  KY+RYE+R S I  HI PC  VKEGD+VII +CRP++K+V F V+
Sbjct:   12 KNIGIEGVNPPSKTCD----DINCPFHGNLRVRGIILEGRLIRYRAEKTGVVERDYLFYDTKYKRYERRRSRIHVHIPPCLDVKEGDNVIIAECRPIAKSVSFVVI 113          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METVA (30S ribosomal protein S17P OS=Methanococcus vannielii GN=rps17p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484
            +IG+  K P    E    D  CPF GT+S+RG+I  G     K + TI+++R    ++ KY+RYEKR +++ AH  PC   K GD V + +CRP+SKT  F V++
Sbjct:    3 NIGIDVKAPENVCE----DVNCPFHGTLSVRGQIFEGVVSGDKGHNTIVIKREVTGYISKYERYEKRTTSLVAHNPPCINAKTGDVVKVMECRPVSKTKSFVVIE 103          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PICTO (30S ribosomal protein S17P OS=Picrophilus torridus GN=rps17p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490
            ++IG+  K P    E T  D KCPF G + I G+I+ GT  S KMN +I+++R     +KKY+RYE + S   AH+  C  V+ GD V I +CR L+KT+ F V++ +
Sbjct:    2 ENIGIDVKKP----ERTCNDPKCPFHGNLRIHGQIIVGTVVSTKMNGSIVLKRESRRLIKKYERYETKISKFHAHLPGCIDVRPGDRVKIAECRKLAKTISFVVVEKV 105          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PYRFU (30S ribosomal protein S17P OS=Pyrococcus furiosus GN=rps17p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490
            + IGL  + P E  +    D KCP+ G + I GR+  G   S K  +T+ V R Y  ++ KY+RYE R S I AH  PC   K GD V+I + RPLSKT  F V+ V+
Sbjct:    3 RDIGLRVQPPAEKCD----DPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLSKTKHFVVVAVL 106          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METMP (30S ribosomal protein S17P OS=Methanococcus maripaludis GN=rps17p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484
            +IG+  K P    E    D  CPF GT+S+RG+I  G   S K + TI+++R    ++ KY+RYEKR +++ AH   C + K GD V + +CRP+SKT  F V++
Sbjct:    3 NIGIDVKAPENVCE----DPNCPFHGTLSVRGQIFEGIVTSDKGHDTIVIKREVTGYISKYERYEKRTTSLVAHNPACIKAKVGDTVKVMECRPISKTKSFVVIE 103          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_HALWD (30S ribosomal protein S17P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps17p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 50/112 (44.64%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS 505
            +IGL    P    E +  D  CPF G++S+RG+ L GT  S  M++T+IV R Y   V KY R  KR S IPAH  PC  + EGD V I + RPLSKT    V++ I  G +
Sbjct:    2 AIGLNVTEP----EVSCADTNCPFHGSLSVRGQTLEGTVASTDMDKTVIVEREYDVRVPKYDRLMKRRSRIPAHAPPCVDLAEGDTVRIAETRPLSKTKSHVVVEQIDTGGA 109          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_HALMA (30S ribosomal protein S17P OS=Haloarcula marismortui GN=rps17p PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.676e-17
Identity = 47/115 (40.87%), Postives = 63/115 (54.78%), Query Frame = 2
Query:  170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGA 514
            ++GL  + P E    T  D+ CPF G +S+RG+ L G   S  M +T++V R Y   V KY R+ KR S +PAH   C  +  GD V I +CRPLSKT    V+ V+     G A
Sbjct:    2 ALGLNVQEPEE----TCADQNCPFHGELSVRGQTLNGEVASTDMEKTVVVEREYDVKVPKYDRFMKRRSRVPAHAPDCLDLAVGDTVTIAECRPLSKTKSHVVVGVVADEQDGDA 112          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PYRKO (30S ribosomal protein S17P OS=Pyrococcus kodakaraensis GN=rps17p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490
            + IGL  + P E       D KCP+ G + I GR + G   S K  +T++V R Y H++KKY+RYE R S + AH   C   K GD V+I + RP+SKT  + V+ V+
Sbjct:    2 REIGLRVQPPAEVCN----DPKCPWHGNLKIHGRYVEGIVVSDKGKKTVVVERQYYHYLKKYERYELRKSKVHAHNPECINAKVGDKVLIAETRPISKTKSWVVVAVL 105          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METJA (30S ribosomal protein S17P OS=Methanocaldococcus jannaschii GN=rps17p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484
            ++IG+  K P    +    DK CPF G + +RG+   G   S K ++T+I++R  + ++KKY+RYE+R + + AH  PC   + GD V + +CRP+SKT  F V++
Sbjct:    4 RNIGIQVKAPEVECD----DKNCPFHGNLPVRGQSFVGVVVSDKPHKTVIIKREVVKYIKKYERYERRTTKLAAHNPPCIHARVGDIVRVMECRPISKTKAFVVVE 105          
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_ARCFU (30S ribosomal protein S17P OS=Archaeoglobus fulgidus GN=rps17p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.189e-17
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490
            + IG+  K P    E    D+ CPF GT+S+RG++L G        +T ++ R  + +V K++RY K+ S + AH   C R + GD V IG+CRP+SKT  F +L+V+
Sbjct:    2 RDIGIDVKPPERECE----DENCPFHGTLSVRGQLLRGKVVKV-YGKTAVIERELIRYVPKFERYMKKRSKLHAHNPRCIRARPGDIVTIGECRPISKTKSFVILEVV 104          
The following BLAST results are available for this feature:
BLAST of FC924872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS17_SULTO4.342e-1844.3430S ribosomal protein S17P OS=Sulfolobus tokodaii ... [more]
RS17_METVA7.407e-1840.9530S ribosomal protein S17P OS=Methanococcus vannie... [more]
RS17_PICTO9.674e-1841.6730S ribosomal protein S17P OS=Picrophilus torridus... [more]
RS17_PYRFU1.263e-1742.5930S ribosomal protein S17P OS=Pyrococcus furiosus ... [more]
RS17_METMP2.155e-1740.9530S ribosomal protein S17P OS=Methanococcus maripa... [more]
RS17_HALWD2.815e-1744.6430S ribosomal protein S17P OS=Haloquadratum walsby... [more]
RS17_HALMA3.676e-1740.8730S ribosomal protein S17P OS=Haloarcula marismort... [more]
RS17_PYRKO4.801e-1740.7430S ribosomal protein S17P OS=Pyrococcus kodakarae... [more]
RS17_METJA4.801e-1737.7430S ribosomal protein S17P OS=Methanocaldococcus j... [more]
RS17_ARCFU8.189e-1738.8930S ribosomal protein S17P OS=Archaeoglobus fulgid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM03FM1 TF Citrus clementina cDNA clone KN0AAP6YM03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924872 ID=FC924872; Name=FC924872; organism=Citrus clementina; type=EST; length=624bp
TAGCCACCTCCGCCCAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAA
ATCCAGCCATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAG
GTGTTTCTCAGCTCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGG
AGGGAATCGATTCTGGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAG
AGGCAATTGAAGGGACTTACATTGATAAGAAGTGTCCGTTCACCGGCACT
GTTTCCATCAGGGGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGAT
GAACAGAACCATCATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAAT
ATCAGAGGTATGAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCT
TGTTTCCGTGTGAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCC
TTTGTCAAAGACGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGT
CTTCTGGTGGTGCAAAGAAGGCATTCACGGCGATGTGAGTTGGAGTCGGC
TGTTTCCAACATTAAATTTTTGCTACTTTTGTTCCATGGGACTTTGTTAT
TTGGATTTTTGCATTGGGAATTAA
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