FC924877

Overview
NameFC924877
Unique NameFC924877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14177 contig Ccv1_Contig14177:85..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_HUMAN (40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.463e-63
Identity = 116/151 (76.82%), Postives = 136/151 (90.07%), Query Frame = 3 
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_CRIGR (40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 4.463e-63
Identity = 116/151 (76.82%), Postives = 136/151 (90.07%), Query Frame = 3 
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLASDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_CHICK (40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 4.463e-63
Identity = 116/151 (76.82%), Postives = 136/151 (90.07%), Query Frame = 3 
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_BOVIN (40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 4.463e-63
Identity = 116/151 (76.82%), Postives = 136/151 (90.07%), Query Frame = 3 
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_LUMRU (40S ribosomal protein S13 OS=Lumbricus rubellus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 1.696e-62
Identity = 120/151 (79.47%), Postives = 130/151 (86.09%), Query Frame = 3 
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKGIS SALPY+R+ P+WLK+   DV++ I K AKKGLTPSQIGVILRDSHG+AQ + V G+KILRILKA GLAP IPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK  K LPPVWKYES TAS LVA
Sbjct:    1 MGRMHAPGKGISQSALPYRRSVPTWLKLGPDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQTRHVAGNKILRILKAKGLAPTIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTRKVLPPVWKYESATASALVA 151
[Close]
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_ICTPU (40S ribosomal protein S13 OS=Ictalurus punctatus GN=rps13 PE=2 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 8.416e-62
Identity = 115/151 (76.16%), Postives = 135/151 (89.40%), Query Frame = 3 
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKG+S SALP++R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLILVESRIHRLARYYK  + L P WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPFRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILVESRIHRLARYYKTKRVLAPNWKYESSTASALVA 151
[Close]
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_WUCBA (40S ribosomal protein S13 OS=Wuchereria bancrofti GN=RPS13 PE=3 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.436e-61
Identity = 113/151 (74.83%), Postives = 135/151 (89.40%), Query Frame = 3 
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKGIS SALPY+R+ P+WLK++S++V++ + + AKKGL PSQIGVILRDSHG+AQV+ VTG+KI+RILKA G+APEIPEDLYHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK  ++LP  WKYES+TAS LV+
Sbjct:    1 MGRMHNPGKGISQSALPYRRSVPTWLKLTSEEVQEQVTRLAKKGLRPSQIGVILRDSHGVAQVRRVTGNKIVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESSTASALVS 151
[Close]
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_BRUPA (40S ribosomal protein S13 OS=Brugia pahangi GN=RPS13 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.436e-61
Identity = 113/151 (74.83%), Postives = 135/151 (89.40%), Query Frame = 3 
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKGIS SALPY+R+ P+WLK++S++V++ + + AKKGL PSQIGVILRDSHG+AQV+ VTG+KI+RILKA G+APEIPEDLYHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK  ++LP  WKYES+TAS LV+
Sbjct:    1 MGRMHNPGKGISQSALPYRRSVPTWLKLTSEEVQEQVTRLAKKGLRPSQIGVILRDSHGVAQVRRVTGNKIVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESSTASALVS 151
[Close]
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_GILMI (40S ribosomal protein S13 OS=Gillichthys mirabilis GN=rps13 PE=2 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 1.875e-61
Identity = 114/151 (75.50%), Postives = 134/151 (88.74%), Query Frame = 3 
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + L P WKY S+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLAPNWKYXSSTASALVA 151
[Close]
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_SPOFR (40S ribosomal protein S13 OS=Spodoptera frugiperda GN=RpS13 PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.449e-61
Identity = 115/151 (76.16%), Postives = 133/151 (88.08%), Query Frame = 3 
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKGIS SALPY+R+ P+WLK+++ DV++ I K  KKGLTPSQIGV+LRDSHG+AQV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of FC924877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_HUMAN4.463e-6376.8240S ribosomal protein S13 OS=Homo sapiens GN=RPS13... [more]
RS13_CRIGR4.463e-6376.8240S ribosomal protein S13 OS=Cricetulus griseus GN... [more]
RS13_CHICK4.463e-6376.8240S ribosomal protein S13 OS=Gallus gallus GN=RPS1... [more]
RS13_BOVIN4.463e-6376.8240S ribosomal protein S13 OS=Bos taurus GN=RPS13 P... [more]
RS13_LUMRU1.696e-6279.4740S ribosomal protein S13 OS=Lumbricus rubellus GN... [more]
RS13_ICTPU8.416e-6276.1640S ribosomal protein S13 OS=Ictalurus punctatus G... [more]
RS13_WUCBA1.436e-6174.8340S ribosomal protein S13 OS=Wuchereria bancrofti ... [more]
RS13_BRUPA1.436e-6174.8340S ribosomal protein S13 OS=Brugia pahangi GN=RPS... [more]
RS13_GILMI1.875e-6175.5040S ribosomal protein S13 OS=Gillichthys mirabilis... [more]
RS13_SPOFR2.449e-6176.1640S ribosomal protein S13 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM08FM1 TF Citrus clementina cDNA clone KN0AAP6YM08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924877 ID=FC924877; Name=FC924877; organism=Citrus clementina; type=EST; length=724bp
CCGCCAGCATGGGTTGTATGCACAGTCGAGGTAAGGGTATTTCCGCATCA
GCTCTGCCTTACAAGAGGACACCACCGAGTTGGCTTAAGATCTCTTCTCA
GGATGTGGAAGATAATATTTGCAAGTTTGCAAAGAAGGGTCTAACACCAT
CTCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAG
AGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGC
TCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTA
TTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGG
TTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAA
GACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCA
CTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAG
GATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGTTAT
TCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGC
GGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGGA
TCCTTTTGTTTCCTATTTTTGGGACTTTTGAAAATTATGATTCTTAAAAG
CCTAATGTTCCCCTTCCTAAAAAA
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