FC924877

Overview
NameFC924877
Unique NameFC924877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14177 contig Ccv1_Contig14177:85..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_DICDI (40S ribosomal protein S13 OS=Dictyostelium discoideum GN=rps13 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.896e-52
Identity = 103/151 (68.21%), Postives = 117/151 (77.48%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MHS GKGIS S+LPY R P +W K ++ +V + +CK AK+G TPS+IG  LRDS G+AQVK+VTGSKILRILK +GLAP IPEDLYHLIKKAV I KHL+R RKD D KF L LVESRIHRL R Y+K   L P WKYES  ASTLVA
Sbjct:    1 MGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA 151          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_MUSDO (40S ribosomal protein S13 (Fragment) OS=Musca domestica GN=RpS13 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46
Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 3
Query:  123 KFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            K  KKGLTPS+IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:    2 KLGKKGLTPSKIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 114          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_PIG (40S ribosomal protein S13 (Fragment) OS=Sus scrofa GN=RPS13 PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.407e-42
Identity = 81/107 (75.70%), Postives = 97/107 (90.65%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 329
            MG MH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRK
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_PYRKO (30S ribosomal protein S15P/S13e OS=Pyrococcus kodakaraensis GN=rps15p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.767e-35
Identity = 72/150 (48.00%), Postives = 105/150 (70.00%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  +H+R +G S S  P +  PP+W++ ++++VE  + K  K+G + + IG ILRD +GI  VK +TG KI +IL+ +GLAPEIPEDL  LI++AV +RKHLE++ KDK S+  L L+ES+I RL +YY++T KLP  W+Y+   A  LV
Sbjct:    1 MARIHARKRGKSGSKRPPRTAPPAWVEYTAEEVEALVVKLRKEGYSTAMIGTILRDQYGIPSVKLITGKKITKILEENGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDKHSRRGLQLIESKIRRLVKYYRRTGKLPAKWRYDPEQAKLLV 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METKA (30S ribosomal protein S15P/S13e OS=Methanopyrus kandleri GN=rps15p PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.308e-35
Identity = 72/142 (50.70%), Postives = 98/142 (69.01%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 434
            M  MHSR +G S S  P +  PPSW++ S ++VE  +   AK+G  P+ IG+ LRD +GI  VK +TG KI  IL+ HGLAPE+PEDL +LI++A  +R+HL+R+ KD  SK  L L+ES+IHRL +YYK+   LP  WKY+
Sbjct:    1 MARMHSRDRGKSGSTRPPRVAPPSWVEYSPEEVESLVVDLAKQGYEPAMIGIKLRDEYGIPDVKLITGKKITEILEEHGLAPELPEDLLNLIRRAKRVREHLKRHPKDLHSKRGLQLIESKIHRLVKYYKRKGVLPEDWKYD 142          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_THEPD (30S ribosomal protein S15P/S13e OS=Thermofilum pendens (strain Hrk 5) GN=rps15p PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.937e-35
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 3
Query:   24 SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 434
            S+ KG S S  P +   P W+K+  ++VE+ +    +KG  PS IGVILRD +GI  VK+VTG  +L+IL+  GLAPEIPEDL +L+K+A+ +RKHLE + KD  SK  L L+ES+IHRL +YYK+   LPP WKYE
Sbjct:    4 SKEKGRSGSTRPPQLKKPEWVKMRPEEVEELVVSLYRKGYPPSMIGVILRDQYGIPMVKAVTGKSVLQILRERGLAPEIPEDLMNLMKRAIRVRKHLEEHPKDYHSKRGLQLIESKIHRLVKYYKREGILPPDWKYE 140          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METJA (30S ribosomal protein S15P/S13e OS=Methanocaldococcus jannaschii GN=rps15p PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34
Identity = 71/150 (47.33%), Postives = 101/150 (67.33%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  MH+R +G S S  P ++  P W++ + + VE  + + AKKG   +QIG+ILRD++GI  VK +TG KI +I+K HGL P++PEDL +L+++AV +RKHLE++ KD  SK  L L+ES+I RL +YYK    LP  W+Y   TA  LV
Sbjct:    1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGIPDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKYYKSKGVLPADWRYTPETARLLV 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_META3 (30S ribosomal protein S15P/S13e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps15p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.160e-33
Identity = 71/150 (47.33%), Postives = 98/150 (65.33%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  +HS  +G S S  P +   P+W  I++++ E+ I K AK+G   + IG+ILRDS+GI  VK VTG  + +I+K + + PEIPEDL++L+KKA+ +R HLE N KD  SK  L L ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:    1 MARLHSGKRGSSGSTRPLRTEVPAWANITAEETEEVIVKMAKEGKQSAMIGLILRDSYGIPDVKLVTGKSVAQIMKDNNVYPEIPEDLFNLMKKAINLRNHLEENTKDIHSKRGLQLTESKIRRLVKYYRNTKVLPAKWRYSPETARLLV 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_STAMF (30S ribosomal protein S15P/S13e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 71/147 (48.30%), Postives = 99/147 (67.35%), Query Frame = 3
Query:   27 RGKGISASALPYKRTPPSWLKI--SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            R KG S S  P +  PP WLK+  S  D+E  + + AKKG TPS IG+ILRD +G+  VK VTG K+++IL+ HG+   +PEDL  L++KAV +R+HLE + KD  +K  L+ +ES+IHRL +YYK+  +LPP WKY    A  +V+
Sbjct:    5 RDKGQSHSTRPARAGPPRWLKLDMSPSDIELLVVELAKKGYTPSMIGIILRDQYGVPLVKQVTGKKLVQILEKHGIKLPVPEDLLFLMRKAVNLRRHLEEHPKDFHAKKGLLDLESKIHRLVKYYKRIGRLPPDWKYTPEQAKLIVS 151          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_UNCMA (30S ribosomal protein S15P/S13e OS=Uncultured methanogenic archaeon RC-I GN=rps15p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.812e-33
Identity = 67/151 (44.37%), Postives = 95/151 (62.91%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            M  MH+R KG S S  P ++TPP+W  +S ++VE  + K   +  T SQ+G+ILRD +G+  +  VTG K+  ILK +G  P++PEDL +LIKKA+ + KHL+ N KD  +K  L L ES++ RL +YY  T  LP  W Y   TA  L++
Sbjct:    1 MAKMHTRRKGRSRSTRPVRKTPPAWFTMSKEEVEKLVVKTYGQNATTSQVGIILRDKYGVPDITQVTGKKVTAILKENGTGPKLPEDLVNLIKKAIRLHKHLDENHKDLHNKRALQLTESKVRRLVKYYHATGVLPMDWVYSPATAEILIS 151          
The following BLAST results are available for this feature:
BLAST of FC924877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_DICDI7.896e-5268.2140S ribosomal protein S13 OS=Dictyostelium discoid... [more]
RS13_MUSDO6.474e-4679.6540S ribosomal protein S13 (Fragment) OS=Musca dome... [more]
RS13_PIG7.407e-4275.7040S ribosomal protein S13 (Fragment) OS=Sus scrofa... [more]
RS15_PYRKO1.767e-3548.0030S ribosomal protein S15P/S13e OS=Pyrococcus koda... [more]
RS15_METKA2.308e-3550.7030S ribosomal protein S15P/S13e OS=Methanopyrus ka... [more]
RS15_THEPD3.937e-3552.5530S ribosomal protein S15P/S13e OS=Thermofilum pen... [more]
RS15_METJA5.685e-3447.3330S ribosomal protein S15P/S13e OS=Methanocaldococ... [more]
RS15_META32.160e-3347.3330S ribosomal protein S15P/S13e OS=Methanococcus a... [more]
RS15_STAMF2.821e-3348.3030S ribosomal protein S15P/S13e OS=Staphylothermus... [more]
RS15_UNCMA4.812e-3344.3730S ribosomal protein S15P/S13e OS=Uncultured meth... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM08FM1 TF Citrus clementina cDNA clone KN0AAP6YM08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924877 ID=FC924877; Name=FC924877; organism=Citrus clementina; type=EST; length=724bp
CCGCCAGCATGGGTTGTATGCACAGTCGAGGTAAGGGTATTTCCGCATCA
GCTCTGCCTTACAAGAGGACACCACCGAGTTGGCTTAAGATCTCTTCTCA
GGATGTGGAAGATAATATTTGCAAGTTTGCAAAGAAGGGTCTAACACCAT
CTCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAG
AGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGC
TCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTA
TTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGG
TTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAA
GACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCA
CTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAG
GATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGTTAT
TCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGC
GGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGGA
TCCTTTTGTTTCCTATTTTTGGGACTTTTGAAAATTATGATTCTTAAAAG
CCTAATGTTCCCCTTCCTAAAAAA
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