FC924877

Overview
NameFC924877
Unique NameFC924877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14177 contig Ccv1_Contig14177:85..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_IGNH4 (30S ribosomal protein S15P/S13e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps15p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 66/142 (46.48%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   33 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            KG S S  P + TPP W+    ++++  I + +KKG  PS IG+ILRD  G+  VK + G K+++I++  G+AP IPEDL+HL+K+AV +R HL  + KDK S   L+ +ES+I RL +YYK+  KLPP WKY+   A  LV
Sbjct:    7 KGKSHSKRPVRNTPPRWVPFGPEEIKALIVELSKKGYGPSMIGIILRDQFGVPLVKPIVGKKLVKIMEEQGVAPPIPEDLFHLMKRAVRVRAHLAEHPKDKHSARGLMEIESKIRRLVKYYKRVGKLPPDWKYDPERARLLV 148          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_SULSO (30S ribosomal protein S15P/S13e OS=Sulfolobus solfataricus GN=rps15p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.074e-32
Identity = 68/145 (46.90%), Postives = 96/145 (66.21%), Query Frame = 3
Query:   27 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            R KG S S  P +   P W++++ ++VE  + + AK+G TPS IG+ILRD +GI  VK + G K+ +IL+  GLAP+IPEDL++LI+KAV +R+H+    +DK +K  L  +ES+I RL RYYK   KLP  W Y+   A  LVA
Sbjct:    5 RAKGKSHSIRPARAGAPKWVRLTREEVEMLVEELAKRGYTPSMIGIILRDQYGIPLVKQIVGKKVTQILEERGLAPQIPEDLFNLIRKAVNVRRHINEYPRDKTAKKGLEEIESKIRRLTRYYKGIGKLPQEWVYDPAKAELLVA 149          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METLZ (30S ribosomal protein S15P/S13e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps15p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.949e-32
Identity = 66/151 (43.71%), Postives = 101/151 (66.89%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            M  MH+R +GI++S  PY++  P+W     +++E  I +  K GLT +QIG++LRD HG+  VK  TG +I  I++ + L  +IPEDL +L+ KA+ +RKHLE+NRKD  +K +L L E+++ RL +YY  TK+LP  W Y+  TA  L++
Sbjct:    1 MARMHARRRGIASSVRPYRKEVPAWSNSDVKEIEGKIVELRKAGLTCAQIGLVLRDKHGVPNVKLATGKRINAIVRENDLDTDIPEDLRNLMHKALMMRKHLEQNRKDLHNKRQLQLTEAKVRRLVKYYVGTKRLPLGWVYKPETAEILLS 151          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_SULTO (30S ribosomal protein S15P/S13e OS=Sulfolobus tokodaii GN=rps15p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.076e-32
Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 3
Query:   27 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            R  G S S  P +   P W++ + ++VE  + + AKKG +PS IG+ILRD +GI  VK +TG K+ +IL+  GLAP+IPEDL++LI+KA  +R+HL  + KDK +K  L  +ES+I RLA YYK+  KLP  WKYE   A  L +
Sbjct:    5 RPNGKSHSTRPVRSGAPKWVRFTREEVELLVEELAKKGYSPSMIGIILRDQYGIPLVKQITGKKLTKILEEKGLAPKIPEDLFNLIRKAANVRRHLFEHPKDKRAKKGLEEIESKIRRLADYYKRIGKLPKEWKYEPEKAELLAS 149          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_PYRIL (30S ribosomal protein S15P/S13e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps15p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.076e-32
Identity = 69/141 (48.94%), Postives = 94/141 (66.67%), Query Frame = 3
Query:   33 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 455
            KG S S  P   T P+W++ +  +VE  + + A++G  PSQIG+ILRD +GI  VK +TG K+ +IL+ HG+  EIPEDL +LIK+A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  KLP  + Y     S L
Sbjct:    9 KGRSRSVRPAHPTVPTWIQYTPDEVEQLVVELARRGFPPSQIGIILRDQYGIPLVKPITGKKLTKILEEHGIRQEIPEDLLNLIKRALRIRKHLEEHPKDMASRRGLQLVESKIHRLIKYYKRVGKLPKEFVYNPEALSHL 149          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_PYRAE (30S ribosomal protein S15P/S13e OS=Pyrobaculum aerophilum GN=rps15p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.548e-31
Identity = 67/141 (47.52%), Postives = 96/141 (68.09%), Query Frame = 3
Query:   33 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 455
            KG S S  P   T P+W++ + ++VE  + + A++G  PSQIG+ILRD +GI  V+ +TG K+ +IL+ HG+  E+PEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  KLPP + Y     S L
Sbjct:    9 KGRSRSVRPAHPTVPTWIQYTPEEVEQLVVELARRGFQPSQIGLILRDQYGIPLVRPITGKKLTKILEEHGIKYELPEDLLNLIRRALRIRKHLEEHPKDMASRRGLQLVESKIHRLVKYYKRVGKLPPDFVYNPQALSHL 149          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_PYRAR (30S ribosomal protein S15P/S13e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.641e-31
Identity = 66/141 (46.81%), Postives = 96/141 (68.09%), Query Frame = 3
Query:   33 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 455
            KG S S  P   T P+W++ + ++VE    + A++G  PSQIG++LRD +GI  VKS+TG K++++L+ HG+  EIPEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  +LP  + Y     S L
Sbjct:   12 KGRSGSVRPAHPTVPTWIQYTPEEVEQLAVELARRGFQPSQIGIVLRDQYGIPLVKSITGKKLVKVLEEHGIKYEIPEDLLNLIRRALRIRKHLEEHPKDMSSRRGLQLVESKIHRLIKYYKRVGRLPRDFVYNPQALSHL 152          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_PYRAB (30S ribosomal protein S15P/S13e OS=Pyrococcus abyssi GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 73/157 (46.50%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  MH+R +G S S  P +  PP WL+ + +D+E+ + K  K+G + + IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LIK+AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+   A  LV
Sbjct:    1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METMA (30S ribosomal protein S15P/S13e OS=Methanosarcina mazei GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 68/150 (45.33%), Postives = 95/150 (63.33%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  MH++ KG S+S  P +  PP W KI + +V        K+G++ S+IG+ILRD +G+   K VTG KI  ILK + +AP +PEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YYK+ K LP  W Y+  TA  ++
Sbjct:    1 MAKMHTKRKGKSSSTRPNRTEPPEWCKIGADEVTTITLDLWKQGVSTSEIGMILRDRYGVPDAKLVTGKKITTILKENNVAPNLPEDLTNLIVKALGLRKHLSTNKKDVHNKRALNLTESKIRRLVKYYKQEKVLPRDWFYKPETAEMMI 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METAC (30S ribosomal protein S15P/S13e OS=Methanosarcina acetivorans GN=rps15p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 65/150 (43.33%), Postives = 96/150 (64.00%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  MH++ KG S+S  P +  PP W KI + +V   +    K+G++ ++IG++LRD +G+   K +TG K+  ILK + +AP IPEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YYK+ K LP  W Y+  TA  ++
Sbjct:    1 MAKMHTKRKGKSSSTRPIRTDPPEWCKIGADEVTTIVLDLWKQGVSTAEIGMVLRDRYGVPDAKLITGKKVTTILKENNVAPNIPEDLTNLIVKALGLRKHLSVNKKDVHNKRSLNLTESKIRRLVKYYKQEKVLPRDWFYKPETAEMMI 150          
The following BLAST results are available for this feature:
BLAST of FC924877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_IGNH46.285e-3346.4830S ribosomal protein S15P/S13e OS=Ignicoccus hosp... [more]
RS15_SULSO4.074e-3246.9030S ribosomal protein S15P/S13e OS=Sulfolobus solf... [more]
RS15_METLZ6.949e-3243.7130S ribosomal protein S15P/S13e OS=Methanocorpuscu... [more]
RS15_SULTO9.076e-3247.5930S ribosomal protein S15P/S13e OS=Sulfolobus toko... [more]
RS15_PYRIL9.076e-3248.9430S ribosomal protein S15P/S13e OS=Pyrobaculum isl... [more]
RS15_PYRAE1.548e-3147.5230S ribosomal protein S15P/S13e OS=Pyrobaculum aer... [more]
RS15_PYRAR2.641e-3146.8130S ribosomal protein S15P/S13e OS=Pyrobaculum ars... [more]
RS15_PYRAB3.449e-3146.5030S ribosomal protein S15P/S13e OS=Pyrococcus abys... [more]
RS15_METMA3.449e-3145.3330S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_METAC4.504e-3143.3330S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM08FM1 TF Citrus clementina cDNA clone KN0AAP6YM08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924877 ID=FC924877; Name=FC924877; organism=Citrus clementina; type=EST; length=724bp
CCGCCAGCATGGGTTGTATGCACAGTCGAGGTAAGGGTATTTCCGCATCA
GCTCTGCCTTACAAGAGGACACCACCGAGTTGGCTTAAGATCTCTTCTCA
GGATGTGGAAGATAATATTTGCAAGTTTGCAAAGAAGGGTCTAACACCAT
CTCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAG
AGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGC
TCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTA
TTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGG
TTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAA
GACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCA
CTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAG
GATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGTTAT
TCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGC
GGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGGA
TCCTTTTGTTTCCTATTTTTGGGACTTTTGAAAATTATGATTCTTAAAAG
CCTAATGTTCCCCTTCCTAAAAAA
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