FC924877

Overview
NameFC924877
Unique NameFC924877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14177 contig Ccv1_Contig14177:85..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_PYRFU (30S ribosomal protein S15P/S13e OS=Pyrococcus furiosus GN=rps15p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.683e-31
Identity = 71/157 (45.22%), Postives = 98/157 (62.42%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  MH+R +G S S  P +  PP W++ + +++E+ + K  K+G + + IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LI++AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+  TA  LV
Sbjct:    1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLV 157          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_PYRCJ (30S ribosomal protein S15P/S13e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30
Identity = 66/141 (46.81%), Postives = 95/141 (67.38%), Query Frame = 3
Query:   33 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 455
            KG S+S  P   T P+W++ + ++VE    + A++G  PSQIG+ILRD +GI  VK +TG K+ +IL+ HG+  E+PEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  K+P  + Y     S L
Sbjct:    9 KGRSSSVRPPHPTVPTWIQYTPEEVEQLAVELARRGFPPSQIGIILRDQYGIPLVKPITGKKLTKILEEHGIKQELPEDLLNLIRRALRIRKHLEEHPKDMASRRGLQLVESKIHRLIKYYKRVGKIPQDFVYNPEALSHL 149          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_ARCFU (30S ribosomal protein S15P/S13e OS=Archaeoglobus fulgidus GN=rps15p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30
Identity = 67/141 (47.52%), Postives = 94/141 (66.67%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 431
            M  +H+R +G S S   Y+ +PP W+ +S ++VE  + +   +G  PS IG+ILRD +GI  VK VTG KI +ILK HG+  + PEDL  LIKKA+ +R HLE +RKDK ++  L L+E++I RL+ YYK+   LP  WKY
Sbjct:    1 MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGIPSVKQVTGKKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEAKIWRLSSYYKEKGVLPADWKY 141          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METVS (30S ribosomal protein S15P/S13e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps15p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  +HS  +G S S  P +   P W+ +S+++V+  I + AK G   + IG ILRD +GI  VK VTG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  SK  L L+ES+I RL +YYK TK LP  W+Y   TA  LV
Sbjct:    1 MARLHSGKRGSSGSTKPLRTEVPEWVSMSAEEVQAKIVEMAKDGNQSAIIGNILRDMYGIPNVKLVTGKSVSSIMKDAGFYSEVPEDLFNLMKKAINLRNHLENNPRDIHSKVGLNLIESKIRRLVKYYKGTKVLPATWRYSPQTARLLV 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_SULAC (30S ribosomal protein S15P/S13e OS=Sulfolobus acidocaldarius GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.712e-30
Identity = 66/144 (45.83%), Postives = 94/144 (65.28%), Query Frame = 3
Query:   27 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            R KG S S  P +  PP W++ + ++VE  + + AK+G  PS IG++LRD +G+  VK +TG K+  IL+   + P+IPEDL++L+++AV IR+HL    KDK +K  L  VES+I RLA YYK+T KLP  W Y+   A  LV
Sbjct:    5 RAKGNSHSIRPVRSGPPKWVRFTREEVELLVEELAKRGYPPSMIGMVLRDQYGVPLVKQITGRKLTAILQDRNMKPKIPEDLFNLMRRAVNIRRHLFEYPKDKSAKRGLEEVESKIRRLASYYKETGKLPQEWSYDPAKAELLV 148          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_PYRHO (30S ribosomal protein S15P/S13e OS=Pyrococcus horikoshii GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.712e-30
Identity = 72/157 (45.86%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  MH+R +G S S  P +  PP WL  + +D+E+ + K  K+G + + IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LI++AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+   A  LV
Sbjct:    1 MARMHARKRGKSGSKRPPRTAPPIWLDYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPRDWRYDPEQAKLLV 157          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METHJ (30S ribosomal protein S15P/S13e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.712e-30
Identity = 63/151 (41.72%), Postives = 97/151 (64.24%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            M  MH+R +GIS S  PY+   P W     + +   I    ++G + ++IG+++RD +G+  VK  TG KI +IL+ + LA EIPEDL +LI+KA+ +RKHL  N++D  +K +L+L ES++ RL +YY  +KKLP  W Y+  TA  L++
Sbjct:    1 MARMHARRRGISRSVRPYRTQAPEWSNTDKEAIIKQIVDLRRQGSSTAEIGLVMRDKYGVPSVKLATGKKITQILRDNDLASEIPEDLRNLIEKALGMRKHLAENKRDIHNKRQLMLTESKVRRLVKYYVSSKKLPKDWVYKPETAEILLS 151          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METS5 (30S ribosomal protein S15P/S13e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.235e-30
Identity = 66/145 (45.52%), Postives = 93/145 (64.14%), Query Frame = 3
Query:   27 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            R  G S S  P +   P W++ S ++VE  I + AKKG TPS IG++LRD +GI   K + G K+ + LK  GLA +IPEDL++LI++AV +R+HL     DK +K  L  +ES+I RL+RYYK+ +KLP  W Y+   A  LV+
Sbjct:    5 RANGSSHSTRPVRTGSPKWVRFSREEVEMLIEELAKKGYTPSMIGIVLRDQYGIPLAKPIIGKKVNQFLKDKGLASQIPEDLFNLIRRAVNVRRHLNEYPGDKTAKKGLEEIESKIRRLSRYYKRVEKLPQDWTYDPAKAELLVS 149          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METM7 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.235e-30
Identity = 66/150 (44.00%), Postives = 92/150 (61.33%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  +HS  +G S S  P +   P W+ +S++D+E  I + AK G   + IG ILRD +G+  VK VTG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:    1 MARLHSGKRGSSGSTRPLRTEVPEWVSMSAEDIEAKIVEMAKDGKQSAIIGNILRDMYGVPSVKLVTGKSVSSIMKEAGFYTEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPDTARLLV 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_CALMQ (30S ribosomal protein S15P/S13e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.235e-30
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 3
Query:   33 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 431
            +G S S  P  +T P WL  S +DVE  + + A++G TPS IGVILRD +GI  VK VT  +I  IL+ +GL P+IPEDL  LI++AV IR+HLE + KD  +K  L+L ES+IHRL +YYK+T  LP  + Y
Sbjct:    9 RGSSGSVRPATKTIPPWLSYSPEDVERLVVELARRGFTPSLIGVILRDQYGIPLVKIVTNKRITEILEENGLKPQIPEDLMALIRRAVNIRRHLEEHPKDMSAKKGLLLTESKIHRLIKYYKRTGVLPLDFTY 141          
The following BLAST results are available for this feature:
BLAST of FC924877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PYRFU7.683e-3145.2230S ribosomal protein S15P/S13e OS=Pyrococcus furi... [more]
RS15_PYRCJ1.003e-3046.8130S ribosomal protein S15P/S13e OS=Pyrobaculum cal... [more]
RS15_ARCFU1.003e-3047.5230S ribosomal protein S15P/S13e OS=Archaeoglobus f... [more]
RS15_METVS1.311e-3045.3330S ribosomal protein S15P/S13e OS=Methanococcus v... [more]
RS15_SULAC1.712e-3045.8330S ribosomal protein S15P/S13e OS=Sulfolobus acid... [more]
RS15_PYRHO1.712e-3045.8630S ribosomal protein S15P/S13e OS=Pyrococcus hori... [more]
RS15_METHJ1.712e-3041.7230S ribosomal protein S15P/S13e OS=Methanospirillu... [more]
RS15_METS52.235e-3045.5230S ribosomal protein S15P/S13e OS=Metallosphaera ... [more]
RS15_METM72.235e-3044.0030S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_CALMQ2.235e-3051.1330S ribosomal protein S15P/S13e OS=Caldivirga maqu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM08FM1 TF Citrus clementina cDNA clone KN0AAP6YM08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924877 ID=FC924877; Name=FC924877; organism=Citrus clementina; type=EST; length=724bp
CCGCCAGCATGGGTTGTATGCACAGTCGAGGTAAGGGTATTTCCGCATCA
GCTCTGCCTTACAAGAGGACACCACCGAGTTGGCTTAAGATCTCTTCTCA
GGATGTGGAAGATAATATTTGCAAGTTTGCAAAGAAGGGTCTAACACCAT
CTCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAG
AGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGC
TCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTA
TTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGG
TTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAA
GACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCA
CTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAG
GATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGTTAT
TCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGC
GGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGGA
TCCTTTTGTTTCCTATTTTTGGGACTTTTGAAAATTATGATTCTTAAAAG
CCTAATGTTCCCCTTCCTAAAAAA
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