FC924877

Overview
NameFC924877
Unique NameFC924877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14177 contig Ccv1_Contig14177:85..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METMP (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.920e-30
Identity = 65/150 (43.33%), Postives = 92/150 (61.33%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  +HS  +G S S  P +   P W+ +S++D+E  I + AK G   + IG ILRD +G+  VK +TG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:    1 MARLHSGKRGSSGSTRPLRTEVPEWVSMSAEDIEAKIVEMAKDGKQSAIIGNILRDMYGVPNVKLITGKSVSSIMKEAGFYAEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPETARLLV 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_NITMS (30S ribosomal protein S15P/S13e OS=Nitrosopumilus maritimus (strain SCM1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30
Identity = 63/146 (43.15%), Postives = 95/146 (65.07%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 446
            MG MH+   G S S  P     PSW+  S  ++E+ + K++K GLTPSQIG+ LRD H I  +K +T   I  IL+ + L  E+PEDL +++KKAV +++HL+ N+ D+ +   L L+E+++HRL+ YYKK  ++P  WKY+S  A
Sbjct:    1 MGRMHTHRHGKSHSIRPATLRAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSIPLIKPITKKTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVYYKKIGRIPATWKYKSVVA 146          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_CENSY (30S ribosomal protein S15P/S13e OS=Cenarchaeum symbiosum GN=rps15p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.504e-30
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 446
            MG +HS   G S S  P     PSW++    +VED I K+AK+GL PSQIG  LRD H I   + +TG  + +I++ HG  PE+PEDL ++++KAV +++HL  N+ D+ +   L L+E+++HRL  YYK+  ++P  WKY+S  A
Sbjct:    1 MGRLHSHRHGKSHSIRPSSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAIPLTRPITGKSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVYYKRIGRIPKDWKYKSVVA 145          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METM5 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps15p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.495e-30
Identity = 64/150 (42.67%), Postives = 92/150 (61.33%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  +HS  +G S S  P +   P W+ +S++++E  I + AK G   + IG ILRD +G+  VK +TG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:    1 MARLHSGKRGSSGSTRPLRTEVPEWVSMSAEEIEAKIVEMAKDGKQSAIIGNILRDMYGVPNVKLITGKSVSSIMKEAGFYAEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPETARLLV 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_AERPE (30S ribosomal protein S15P/S13e OS=Aeropyrum pernix GN=rps15p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.495e-30
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 3
Query:   27 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            R KG S S  P    PP WL  + +++E  I + AKKG  PS IG+ILRD +GI  VK + G  +  +L+  GL P +PEDL  LI+KAV +R+HL+ + KD  +K  LI +ES+I RL +YYK+   LPP WKY+   A  LV+
Sbjct:    5 REKGQSHSTRPPHPQPPQWLVFTPEEIELLIAELAKKGYGPSMIGIILRDQYGIPLVKPILGKGVSEVLREKGLHPPLPEDLLMLIRKAVNLRRHLDEHPKDYHAKKGLIDLESKIRRLVKYYKRRGVLPPDWKYDPEAAKLLVS 149          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_HYPBU (30S ribosomal protein S15P/S13e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps15p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.449e-29
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 3
Query:   27 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            R KG S S  P   T P W++   +++E+ I   A+KG  PS IG+ILRD  GI  VK + G  I  +L+  G+   +PEDL+ LI+KAV +R+HLE + KD  +K  L+ +ES+I RLA YYK+  KLP  WKY+   A  LVA
Sbjct:    6 RKKGRSHSTRPATPTVPKWIQYDPEEIEEIIVDLARKGYGPSMIGIILRDQFGIPLVKPILGKSITEVLEERGIKMVVPEDLFRLIEKAVNLRRHLEEHPKDTHAKKGLLDLESKIRRLAEYYKRVGKLPRDWKYDPQQAKLLVA 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METBF (30S ribosomal protein S15P/S13e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps15p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.216e-29
Identity = 63/150 (42.00%), Postives = 94/150 (62.67%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  MH++ KG S+S  P +  PP W KI +++V        K+G++ ++IG+ LRD +G+   K +TG KI  ILK + + P +PEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YY++ K LP  W Y+  TA  ++
Sbjct:    1 MAKMHTKRKGKSSSTRPIRTEPPEWCKIGAEEVTTITLDLWKQGVSTAEIGMTLRDRYGVPDAKLITGKKITTILKENNVYPNVPEDLTNLIVKALRLRKHLSVNKKDVHNKRALNLTESKIRRLVKYYQQEKVLPRDWFYKPETAEMMI 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METMJ (30S ribosomal protein S15P/S13e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.191e-29
Identity = 60/150 (40.00%), Postives = 94/150 (62.67%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  M++R +G S+S  PY++  P W    + ++E  +    K G++ SQIG++LRD + +  VK  TG +I  IL+  GL  EIPEDL +L++KA+ IRKHL  N KD  +K +L + ES++ RL +YY ++ ++P  W Y+  TA  L+
Sbjct:    1 MARMYARRRGTSSSVRPYRKEAPEWSNTDATEIEKIVVDLRKDGMSTSQIGLVLRDRYAVPDVKLATGKRIGEILREKGLESEIPEDLRNLMEKALGIRKHLAENNKDVHNKRQLQIAESKVRRLVKYYVRSGRMPKGWTYKPETAEILL 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METBU (30S ribosomal protein S15P/S13e OS=Methanococcoides burtonii (strain DSM 6242) GN=rps15p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.191e-29
Identity = 63/150 (42.00%), Postives = 92/150 (61.33%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  MH+R KG S S  P +   P+W   +++++   +    K+G + S IG++LRD++G+  VK  TG K+  IL+ +   P +PEDLY+LI KA+ +RKHL  N KD  +K  L   ES+I RL +YY+ TK LP  WKY+  TA  L+
Sbjct:    1 MAKMHTRTKGKSGSTKPIRSESPAWSTATTEEITKVVLDLWKQGNSTSVIGMVLRDNYGVPDVKLATGKKVTEILRDNSEEPNVPEDLYNLIVKAIGLRKHLVVNNKDVHNKRSLQSAESKIRRLVKYYQSTKVLPIDWKYKPETAEMLI 150          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METTH (30S ribosomal protein S15P/S13e OS=Methanobacterium thermoautotrophicum GN=rps15p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.092e-28
Identity = 62/128 (48.44%), Postives = 89/128 (69.53%), Query Frame = 3
Query:   75 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            P W++ S++++ED I K  ++G + S+IG+ILRD HGI  VK+VTG KI +IL+ H + PE PEDL +LI+KAV IR HL+ + KD  ++  L +VES+I RL RYY +   LP  W+Y+   A+ LV
Sbjct:    6 PDWVEYSNEEIEDLIVKLYREGNSTSKIGIILRDQHGIPSVKAVTGLKITQILEKHEMKPEYPEDLMNLIRKAVNIRDHLKEHPKDLHTRRGLQIVESKIRRLVRYYVREGVLPEGWRYDPQKAALLV 133          
The following BLAST results are available for this feature:
BLAST of FC924877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_METMP2.920e-3043.3330S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_NITMS3.813e-3043.1530S ribosomal protein S15P/S13e OS=Nitrosopumilus ... [more]
RS15_CENSY6.504e-3043.1530S ribosomal protein S15P/S13e OS=Cenarchaeum sym... [more]
RS15_METM58.495e-3042.6730S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_AERPE8.495e-3046.2130S ribosomal protein S15P/S13e OS=Aeropyrum perni... [more]
RS15_HYPBU1.449e-2945.5230S ribosomal protein S15P/S13e OS=Hyperthermus bu... [more]
RS15_METBF4.216e-2942.0030S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_METMJ7.191e-2940.0030S ribosomal protein S15P/S13e OS=Methanoculleus ... [more]
RS15_METBU7.191e-2942.0030S ribosomal protein S15P/S13e OS=Methanococcoide... [more]
RS15_METTH2.092e-2848.4430S ribosomal protein S15P/S13e OS=Methanobacteriu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YM08FM1 TF Citrus clementina cDNA clone KN0AAP6YM08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924877 ID=FC924877; Name=FC924877; organism=Citrus clementina; type=EST; length=724bp
CCGCCAGCATGGGTTGTATGCACAGTCGAGGTAAGGGTATTTCCGCATCA
GCTCTGCCTTACAAGAGGACACCACCGAGTTGGCTTAAGATCTCTTCTCA
GGATGTGGAAGATAATATTTGCAAGTTTGCAAAGAAGGGTCTAACACCAT
CTCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAG
AGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGC
TCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTA
TTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGG
TTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAA
GACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCA
CTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAG
GATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGTTAT
TCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGC
GGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGGA
TCCTTTTGTTTCCTATTTTTGGGACTTTTGAAAATTATGATTCTTAAAAG
CCTAATGTTCCCCTTCCTAAAAAA
back to top