FC924877

Overview
NameFC924877
Unique NameFC924877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14177 contig Ccv1_Contig14177:85..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_ENCCU (40S ribosomal protein S13 OS=Encephalitozoon cuniculi GN=RPS13 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.569e-28
Identity = 60/140 (42.86%), Postives = 85/140 (60.71%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 428
            M  MHS GKG S S  PY    P+WL  S  +++ ++ +   KG+    IG  LRD +GI +   V G  I R L+ +G+ P+IP DL  L+ +A  +R HL   RKD  +K+RLILV SR++R+ARYYK+  ++P  WK
Sbjct:    1 MAKMHSSGKGRSGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGIGKASDVLGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVARYYKRKMRIPGNWK 140          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METST (30S ribosomal protein S15P/S13e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps15p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.088e-28
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 3
Query:   75 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            P W++ S +++E+ I K  K+G + SQIG+ LRD HGI   K+V G KI  ILK +G   E PEDL +LIK+AV IR+HLE N KD  +K  LI +ES+I RL +YY +   LP  W+Y+  TA+ LV
Sbjct:    5 PEWVEQSPEEIEELIVKLHKEGQSTSQIGITLRDQHGIPNTKAVLGEKITDILKRNGTDFEYPEDLLNLIKRAVNIREHLEENPKDIHTKRGLIKIESKIRRLVKYYTRNNVLPEGWRYDPKTAALLV 132          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METS3 (30S ribosomal protein S15P/S13e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps15p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.313e-27
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 3
Query:   75 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            P W+  S +++E+ I KF K+G + S+IG+ILRD +GI  VK VTG +I +ILK +  A + PEDL +LIK+AV IR HL  N KD  SK  L ++ESRI RLA YY     LP  W+Y    A+ LV
Sbjct:    4 PEWVTYSDEEIEEMILKFNKEGKSTSEIGIILRDQYGIPSVKEVTGERITQILKRNDQAGKYPEDLMNLIKRAVNIRDHLAENPKDLHSKRGLTIIESRIRRLASYYVNEGALPEGWRYNPKEAALLV 131          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_NANEQ (30S ribosomal protein S15P/S13e OS=Nanoarchaeum equitans GN=rps15p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.698e-26
Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   21 HSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 431
            H R  G S S  P + T P W     + VE+ I + AK+G +P+ IG+ILRD +GI  V+   G  +   L+  GL P+IP DL +L+K+A  + KH+E N +D  +K    L+ S+IHRLA+YYK+   LP  WKY
Sbjct:    7 HKRYHGQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQYGIPDVRLYIGKSLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLAKYYKRKGVLPKDWKY 143          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METB6 (30S ribosomal protein S15P/S13e OS=Methanoregula boonei (strain 6A8) GN=rps15p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 62/151 (41.06%), Postives = 90/151 (59.60%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            M  MH+R +G S+S  P +   P+W       +E  I    K+G + S IG++LRD +G+  VK VTG  I  IL  + ++ EIPEDL  L+ KA+ +RKHL  N KD  +K +L LVE++I RL +YY  T+KLP  + Y+   A  L++
Sbjct:    1 MARMHARRRGKSSSVRPARNEAPAWSNTDKAAIEKLIVDLRKEGTSASMIGLVLRDRYGVPDVKMVTGKSIGDILTENKVSSEIPEDLRDLMVKALGLRKHLGENPKDLHNKRQLHLVEAKIRRLVKYYIGTRKLPAGFTYKPENAEILLS 151          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METTP (30S ribosomal protein S15P/S13e OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps15p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 60/167 (35.93%), Postives = 89/167 (53.29%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLER----------------NRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            M  MHSR KG S S  P     P W  +S +++E  I    ++G++ + IG+ LRD +G+  +K + G  +   L+     PEIPEDL +L++KA+ +R+HL R                  KD  +K  L LVES+I RL RYYK+  +LP  W+Y   TA   ++
Sbjct:    1 MARMHSRKKGSSGSRPPVVDKLPEWCDVSKEELEKTIMTLHERGMSNAMIGLTLRDQYGVPNLKLILGKSLSSFLRDRNALPEIPEDLSNLMRKALRLRRHLLRAQPRGTVSDTSISRLPRTKDIHNKRALQLVESKIRRLVRYYKQVGRLPATWEYRPETAEIQIS 167          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_PICTO (30S ribosomal protein S15P/S13e OS=Picrophilus torridus GN=rps15p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 54/142 (38.03%), Postives = 84/142 (59.15%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 434
            M  MH+R +G S S     R  PSW++ S  ++++ I K  K+G+T S IG+ LRD + I   + V   K+ ++LK + L  ++PEDL  LI++     KHL  N+ D ++K +  L+ S++ RL RYYK+T +LP  W  E
Sbjct:    1 MARMHTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAIPGTRPVLHMKLGQVLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRTSRLPQDWSLE 142          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_HALSA (30S ribosomal protein S15P/S13e OS=Halobacterium salinarium GN=rps15p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 58/154 (37.66%), Postives = 86/154 (55.84%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458
            M  MH+R +G S S  P    PP W  +    +E+ + + A++G  PSQIG+ LRD       +  VK  TG K+  IL+AH   PE+PED  +L++KAV + +H+E N +D  +K  L   +S+I RLA YY +  KL   + Y   TA  ++
Sbjct:    1 MARMHTRRRGSSGSDRPTADEPPEWSDVDEDAIEERVVELAEQGHDPSQIGLKLRDEGVQGTPVPDVKLATGKKVTEILEAHDAEPELPEDFRNLLEKAVRLHEHVEANGQDHQNKRALQNTQSKIRRLADYY-RGDKLDEEFAYSYETAREII 153          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_THEAC (30S ribosomal protein S15P/S13e OS=Thermoplasma acidophilum GN=rps15p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.452e-21
Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 425
            M  MH+R +G S S   Y    PSW++ S  +V + I    K G+ PS IG+ LRD +GI  VK+V G K+ ++L   GL  ++PEDL +LIK+   + KH+E N KD+ +K    L+ +++ RL +YYK+T  L   W
Sbjct:    1 MARMHTRKRGRSGSKKVYG-VQPSWIQYSKDEVINTIVNLKKSGVPPSVIGIKLRDQYGIPTVKAVLGMKLGKVLSEKGLKDDVPEDLGNLIKRYNNVAKHVELNPKDQANKRGRDLIMAKMLRLVKYYKRTGVLDEKW 138          
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_HALWD (30S ribosomal protein S15P/S13e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps15p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 398
            M  MH+R +G S S  P    PP W  I +  +E+ + + A++G  PSQIG+ LRD       I  VK  T  K+  IL+ H   PE+PEDL +L+++A+ +R+H++ N +D  +K  L   ES+I RLA YY+
Sbjct:    1 MARMHTRRRGSSGSDKPVADDPPEWSDIDADAIEERVVELAEQGHEPSQIGMKLRDEGVKGTPIPDVKLATDKKVTTILEEHNAKPELPEDLRNLMERAIRLRRHVDENGQDMQNKRALQNTESKIRRLASYYR 134          
The following BLAST results are available for this feature:
BLAST of FC924877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_ENCCU3.569e-2842.8640S ribosomal protein S13 OS=Encephalitozoon cunic... [more]
RS15_METST6.088e-2849.2230S ribosomal protein S15P/S13e OS=Methanosphaera ... [more]
RS15_METS32.313e-2749.2230S ribosomal protein S15P/S13e OS=Methanobrevibac... [more]
RS15_NANEQ5.698e-2642.3430S ribosomal protein S15P/S13e OS=Nanoarchaeum eq... [more]
RS15_METB62.828e-2541.0630S ribosomal protein S15P/S13e OS=Methanoregula b... [more]
RS15_METTP6.965e-2435.9330S ribosomal protein S15P/S13e OS=Methanosaeta th... [more]
RS15_PICTO2.241e-2238.0330S ribosomal protein S15P/S13e OS=Picrophilus tor... [more]
RS15_HALSA4.992e-2237.6630S ribosomal protein S15P/S13e OS=Halobacterium s... [more]
RS15_THEAC1.452e-2140.2930S ribosomal protein S15P/S13e OS=Thermoplasma ac... [more]
RS15_HALWD3.236e-2139.5530S ribosomal protein S15P/S13e OS=Haloquadratum w... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM08FM1 TF Citrus clementina cDNA clone KN0AAP6YM08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924877 ID=FC924877; Name=FC924877; organism=Citrus clementina; type=EST; length=724bp
CCGCCAGCATGGGTTGTATGCACAGTCGAGGTAAGGGTATTTCCGCATCA
GCTCTGCCTTACAAGAGGACACCACCGAGTTGGCTTAAGATCTCTTCTCA
GGATGTGGAAGATAATATTTGCAAGTTTGCAAAGAAGGGTCTAACACCAT
CTCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAG
AGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGC
TCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTA
TTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGG
TTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAA
GACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCA
CTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAG
GATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGTTAT
TCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGC
GGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGGA
TCCTTTTGTTTCCTATTTTTGGGACTTTTGAAAATTATGATTCTTAAAAG
CCTAATGTTCCCCTTCCTAAAAAA
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