FC924883

Overview
NameFC924883
Unique NameFC924883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1790 contig Ccv1_Contig1790:10..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: OGDHL_XENLA (2-oxoglutarate dehydrogenase-like, mitochondrial OS=Xenopus laevis GN=ogdhl PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.135e-55
Identity = 107/213 (50.23%), Postives = 146/213 (68.54%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLR-KQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSA-SDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRLATAM 633
            G+V+LLPHG +G GPEHSSAR ERFLQMS+D+    PE        Q+ +CNW +VN + PA+YFHVLRRQI   FRKPLI+ +PK+LLRH + KS+   FDD+       K GT F+R+I +    S   + ++R++ C+GKVYYEL +ER ++   S VAI R+EQ+ PFP+DLV++E ++Y  +E+VWCQEE  NMG Y Y+  R  T +
Sbjct:  769 GIVLLLPHGMEGMGPEHSSARPERFLQMSNDDSDAYPEFTQDFDVSQLFDCNWIVVNCSNPASYFHVLRRQILLPFRKPLIIFTPKSLLRHPEAKSS---FDDM-------KTGTNFQRVIPENGAASHSPQEVKRVIFCTGKVYYELVKERHRKGLDSQVAITRLEQISPFPFDLVKQEAEKYATSELVWCQEEHKNMGYYDYVKARFLTIL 971          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_OCHA4 (2-oxoglutarate dehydrogenase E1 component OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=sucA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.696e-52
Identity = 110/207 (53.14%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV LLPHGY+GQGPEHSSARLER+LQM  ++                  N Q+ NVTTPANYFH+LRRQ+ R FRKPLI+M+PK+LLRHK   S L+E   + G   F +      +  KD+      +  IRR+VLCSGKVYY+L EER+KR   DV + RVEQL PFP   +  EL R+ +AE+VWCQEEP NMGA+++I P L
Sbjct:  769 GLVCLLPHGYEGQGPEHSSARLERWLQMCAED------------------NMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAVSTLNE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYL 954          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BRUAB (2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus GN=sucA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.779e-52
Identity = 109/207 (52.66%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV LLPHG++GQGPEHSSARLER+LQ+  ++                  N Q+ NVTTPANYFH+LRRQ+ R FRKPLI+M+PK+LLRHK   S L+E   + G   F +      R  KD+      +  IRR+VLCSGKVYY+L EER+KR   DV + RVEQL PFP   +  EL R+ +AE+VWCQEEP NMGA+++I P L
Sbjct:  773 GLVCLLPHGFEGQGPEHSSARLERYLQLCAED------------------NMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDARYNKDKGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYL 958          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BRUA2 (2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus (strain 2308) GN=sucA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.779e-52
Identity = 109/207 (52.66%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV LLPHG++GQGPEHSSARLER+LQ+  ++                  N Q+ NVTTPANYFH+LRRQ+ R FRKPLI+M+PK+LLRHK   S L+E   + G   F +      R  KD+      +  IRR+VLCSGKVYY+L EER+KR   DV + RVEQL PFP   +  EL R+ +AE+VWCQEEP NMGA+++I P L
Sbjct:  773 GLVCLLPHGFEGQGPEHSSARLERYLQLCAED------------------NMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDARYNKDKGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYL 958          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BRUA1 (2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus (strain S19) GN=sucA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.779e-52
Identity = 109/207 (52.66%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV LLPHG++GQGPEHSSARLER+LQ+  ++                  N Q+ NVTTPANYFH+LRRQ+ R FRKPLI+M+PK+LLRHK   S L+E   + G   F +      R  KD+      +  IRR+VLCSGKVYY+L EER+KR   DV + RVEQL PFP   +  EL R+ +AE+VWCQEEP NMGA+++I P L
Sbjct:  773 GLVCLLPHGFEGQGPEHSSARLERYLQLCAED------------------NMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDARYNKDKGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYL 958          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BRUSU (2-oxoglutarate dehydrogenase E1 component OS=Brucella suis GN=sucA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.418e-52
Identity = 108/207 (52.17%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV LLPHG++GQGPEHSSARLER+LQ+  ++                  N Q+ NVTTPANYFH+LRRQ+ R FRKPLI+M+PK+LLRHK   S L+E   + G   F +      +  KD+      +  IRR+VLCSGKVYY+L EER+KR   DV + RVEQL PFP   +  EL R+ +AE+VWCQEEP NMGA+++I P L
Sbjct:  773 GLVCLLPHGFEGQGPEHSSARLERYLQLCAED------------------NMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYL 958          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BRUSI (2-oxoglutarate dehydrogenase E1 component OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=sucA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.418e-52
Identity = 108/207 (52.17%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV LLPHG++GQGPEHSSARLER+LQ+  ++                  N Q+ NVTTPANYFH+LRRQ+ R FRKPLI+M+PK+LLRHK   S L+E   + G   F +      +  KD+      +  IRR+VLCSGKVYY+L EER+KR   DV + RVEQL PFP   +  EL R+ +AE+VWCQEEP NMGA+++I P L
Sbjct:  773 GLVCLLPHGFEGQGPEHSSARLERYLQLCAED------------------NMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYL 958          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BRUO2 (2-oxoglutarate dehydrogenase E1 component OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=sucA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.418e-52
Identity = 108/207 (52.17%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV LLPHG++GQGPEHSSARLER+LQ+  ++                  N Q+ NVTTPANYFH+LRRQ+ R FRKPLI+M+PK+LLRHK   S L+E   + G   F +      +  KD+      +  IRR+VLCSGKVYY+L EER+KR   DV + RVEQL PFP   +  EL R+ +AE+VWCQEEP NMGA+++I P L
Sbjct:  773 GLVCLLPHGFEGQGPEHSSARLERYLQLCAED------------------NMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYL 958          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BRUME (2-oxoglutarate dehydrogenase E1 component OS=Brucella melitensis GN=sucA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.418e-52
Identity = 108/207 (52.17%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV LLPHG++GQGPEHSSARLER+LQ+  ++                  N Q+ NVTTPANYFH+LRRQ+ R FRKPLI+M+PK+LLRHK   S L+E   + G   F +      +  KD+      +  IRR+VLCSGKVYY+L EER+KR   DV + RVEQL PFP   +  EL R+ +AE+VWCQEEP NMGA+++I P L
Sbjct:  773 GLVCLLPHGFEGQGPEHSSARLERYLQLCAED------------------NMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYL 958          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BRUMB (2-oxoglutarate dehydrogenase E1 component OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=sucA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.418e-52
Identity = 108/207 (52.17%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV LLPHG++GQGPEHSSARLER+LQ+  ++                  N Q+ NVTTPANYFH+LRRQ+ R FRKPLI+M+PK+LLRHK   S L+E   + G   F +      +  KD+      +  IRR+VLCSGKVYY+L EER+KR   DV + RVEQL PFP   +  EL R+ +AE+VWCQEEP NMGA+++I P L
Sbjct:  773 GLVCLLPHGFEGQGPEHSSARLERYLQLCAED------------------NMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYL 958          
The following BLAST results are available for this feature:
BLAST of FC924883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
OGDHL_XENLA8.135e-5550.232-oxoglutarate dehydrogenase-like, mitochondrial O... [more]
ODO1_OCHA41.696e-5253.142-oxoglutarate dehydrogenase E1 component OS=Ochro... [more]
ODO1_BRUAB3.779e-5252.662-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUA23.779e-5252.662-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUA13.779e-5252.662-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUSU8.418e-5252.172-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUSI8.418e-5252.172-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUO28.418e-5252.172-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUME8.418e-5252.172-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUMB8.418e-5252.172-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YL02FM1 TF Citrus clementina cDNA clone KN0AAP1YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924883 ID=FC924883; Name=FC924883; organism=Citrus clementina; type=EST; length=644bp
GGACTTGTTGTGCTGCTCCCACATGGTTATGATGGTCAGGGCCCTGAACA
TTCAAGTGCACGATTGGAGCGTTTCCTTCAGATGAGTGATGACAATCCAT
TTGTTATACCTGAGATGGATCCAACTCTTCGGAAACAAATTCAAGAATGT
AACTGGCAGATTGTGAATGTTACAACTCCTGCTAATTATTTCCATGTTTT
GCGGCGTCAGATACACAGGGGATTCCGTAAGCCTCTCATCGTGATGTCAC
CCAAAAACCTGTTGCGTCACAAGGACTGCAAATCAAATCTTTCCGAGTTT
GATGATGTCCAAGGTCACCCTGGTTTTGACAAACAAGGGACCAGATTTAA
GCGGCTTATTAAGGATCAGAATGGGCACTCTGATCTTGAGGAGGGTATCA
GACGTCTGGTTCTTTGTTCTGGAAAGGTTTATTACGAGCTTGATGAAGAG
CGGAAGAAGCGCAGTGCAAGTGATGTTGCAATTTGCAGGGTGGAACAGCT
TTGTCCTTTCCCATATGACCTGGTTCAGCGTGAGCTTAAACGATATCCAA
ATGCCGAGATCGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGCGTAC
ACCTACATTTCACCCCGACTTGCCACTGCCATGAAAGCATTGGG
back to top