FC924883

Overview
NameFC924883
Unique NameFC924883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1790 contig Ccv1_Contig1790:10..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BRUC2 (2-oxoglutarate dehydrogenase E1 component OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=sucA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.418e-52
Identity = 108/207 (52.17%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV LLPHG++GQGPEHSSARLER+LQ+  ++                  N Q+ NVTTPANYFH+LRRQ+ R FRKPLI+M+PK+LLRHK   S L+E   + G   F +      +  KD+      +  IRR+VLCSGKVYY+L EER+KR   DV + RVEQL PFP   +  EL R+ +AE+VWCQEEP NMGA+++I P L
Sbjct:  773 GLVCLLPHGFEGQGPEHSSARLERYLQLCAED------------------NMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYL 958          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_SCHPO (2-oxoglutarate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=kgd1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.456e-51
Identity = 101/217 (46.54%), Postives = 147/217 (67.74%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLI-KDQNGHSDL-EEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRLATAMKAL 642
            G+V+ LPHGYDGQGPEHSSAR+ER+LQ+ +++P   P  +  L++Q Q+CN Q + VT P+ YFH LRR IHR FRKPL++   K+LLRH   +S + EFD+  G          FK ++ ++++G S L  E I +L++CSG+V+  L + R++    ++AI RVEQL PF +  +   + +YPN  EI+WCQEEP+N GA+TY+ PR+ T +K L
Sbjct:  766 GIVLSLPHGYDGQGPEHSSARMERYLQLCNEDPREFPS-EEKLQRQHQDCNIQAIYVTKPSQYFHALRRNIHRQFRKPLVIFFSKSLLRHPAARSTIDEFDEKHG----------FKLILEEEEHGKSILPPEKIEKLIICSGQVWVALSKAREENKIDNIAITRVEQLHPFGWKQMAANISQYPNLKEIIWCQEEPLNAGAWTYMEPRIYTILKHL 971          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_CAEBR (2-oxoglutarate dehydrogenase, mitochondrial OS=Caenorhabditis briggsae GN=CBG01737 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.537e-50
Identity = 100/214 (46.73%), Postives = 141/214 (65.89%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTL------RKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKK-RSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+G GPEHSSAR ERFLQM +++  +  ++D          +Q+ + NW + N TTPAN +H+LRRQ+   FRKP +V SPK+LLRH   +S + +F          + G+ F+R+I +    S     ++RLV C+GKVYY++   RK     +DVA+ RVEQL PFPYDLVQ+E ++Y  AEI+W QEE  NMGA++++ PR+
Sbjct:  772 GLVMLLPHGYEGMGPEHSSARPERFLQMCNEDDEI--DLDKIAFGGTFEAQQLHDTNWIVANCTTPANIYHLLRRQVTMPFRKPAVVFSPKSLLRHPMARSPVEDF----------QSGSNFQRIIPETGAPSQNPPNVQRLVFCTGKVYYDMVAARKHVGKENDVALVRVEQLSPFPYDLVQQECRKYQGAEIIWAQEEHKNMGAWSFVQPRI 973          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_CAEEL (2-oxoglutarate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T22B11.5 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.029e-49
Identity = 100/212 (47.17%), Postives = 141/212 (66.51%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPE---MDPTLR-KQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKK-RSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+G GPEHSSAR ERFLQM +++  +  E    + T   +Q+ + NW + N TTPAN +H+LRRQ+   FRKP +V SPK+LLRH   +S + +F          + G+ F+R+I +    S     ++R+V C+GKVYY++   RK     +DVA+ RVEQL PFPYDLVQ+E ++Y  AEI+W QEE  NMGA++++ PR+
Sbjct:  774 GLVMLLPHGYEGMGPEHSSARPERFLQMCNEDDEIDLEKIAFEGTFEAQQLHDTNWIVANCTTPANIYHLLRRQVTMPFRKPAVVFSPKSLLRHPMARSPVEDF----------QSGSNFQRVIPETGAPSQNPPDVKRVVFCTGKVYYDMVAARKHVGKENDVALVRVEQLSPFPYDLVQQECRKYQGAEILWAQEEHKNMGAWSFVQPRI 975          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_YEAST (2-oxoglutarate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=KGD1 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.755e-49
Identity = 106/215 (49.30%), Postives = 142/215 (66.05%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKD-QNGHS-DLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRLATAMK 636
            GLV+ LPHGYDGQGPEHSS RLERFLQ+++++P   P  +  L++Q Q+CN+Q+V  TTPAN FH+LRRQ HR FRKPL +   K LLRH   +S+LSEF +             F+ +I+D ++G S   +E  +RLVL SG+VY  L + R+       A  ++EQL PFP+  ++  L  YPN  EIVWCQEEP+NMG++ Y  PRL T +K
Sbjct:  768 GLVLSLPHGYDGQGPEHSSGRLERFLQLANEDPRYFPS-EEKLQRQHQDCNFQVVYPTTPANLFHILRRQQHRQFRKPLALFFSKQLLRHPLARSSLSEFTE-----------GGFQWIIEDIEHGKSIGTKEETKRLVLLSGQVYTALHKRRESLGDKTTAFLKIEQLHPFPFAQLRDSLNSYPNLEEIVWCQEEPLNMGSWAYTEPRLHTTLK 970          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: DHTK1_DICDI (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial OS=Dictyostelium discoideum GN=odhA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.107e-49
Identity = 100/207 (48.31%), Postives = 136/207 (65.70%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPR 618
            G+V+LLPHG+DG GPEHSS R+ERFLQ+SD     +   D TL  Q  E N+  +N +TPANYFH LRRQ+ R +RKPLIV  PK LLRH +C S L+E             GT F+ ++ D +  ++    I+R++ CSGKV+Y+L EERK ++ +DVAI R+EQ+ PFPY  +Q E+ RY NA +  W QEE  N G ++++ PR
Sbjct:  665 GIVILLPHGFDGAGPEHSSCRIERFLQLSDTE--AVNVKDDTLINQ--ETNFYFINPSTPANYFHALRRQMIRNYRKPLIVAGPKVLLRHPNCFSTLNEM----------APGTHFQTVLSDPDTINNAST-IKRVIFCSGKVFYDLQEERKAKNFNDVAIIRLEQIAPFPYQRIQEEINRYSNATKFAWVQEEQQNGGCWSFVEPR 856          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_RALEH (2-oxoglutarate dehydrogenase E1 component OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhA PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 4.780e-47
Identity = 100/205 (48.78%), Postives = 135/205 (65.85%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEG-IRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYI 609
            GL ++LPHGY+GQGPEHSSAR+ERFLQ+  D+                  N Q+   TTPA  FH+LRRQ+ R FRKPL++M+PK+LLR+KD  S LS+    +GH         F+ +I D   H +L    ++R+++CSGKVYY+L   RK+R A+D A+ R+EQL PFP+  V  ELK+YPNA EIVWCQ+EP N GA+ ++
Sbjct:  723 GLTLMLPHGYEGQGPEHSSARIERFLQLCADH------------------NMQVCQPTTPAQIFHLLRRQMIRLFRKPLVIMTPKSLLRNKDAVSPLSDL--AKGH---------FETVIPD---HEELNASKVKRVIMCSGKVYYDLVNTRKEREANDTAVIRLEQLYPFPHKAVAAELKKYPNATEIVWCQDEPQNQGAWFFV 895          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: DHTK1_DANRE (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Danio rerio GN=dhtkd1 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 5.469e-43
Identity = 96/209 (45.93%), Postives = 126/209 (60.29%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERK--KRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPR 618
            GLV+LLPHGYDG GPEHSS R+ERFLQ+ D     +              N  +VN T PA YFH+LRRQ+ R FRKPLIV SPK LLR     S LS+             GT FK +I D + +      ++R++ CSGK YY L + R+    +  + A+ RVE+LCPFP + +Q+EL +Y NA E +W QEEP NMG ++++SPR
Sbjct:  693 GLVILLPHGYDGAGPEHSSCRIERFLQLCDSKEEGVDG---------DTVNMAVVNPTLPAQYFHLLRRQMIRNFRKPLIVASPKTLLRFSGAVSGLSDMG----------PGTSFKPIIGDSSVN---PASVQRVLFCSGKHYYALLKHRETIPEAEKNTALVRVEELCPFPTEALQQELNKYTNAKEFIWSQEEPQNMGCWSFVSPR 879          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: DHTK1_XENLA (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Xenopus laevis GN=dhtkd1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.143e-43
Identity = 94/209 (44.98%), Postives = 127/209 (60.77%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKK--RSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPR 618
            G+V+LLPHGYDG GPEHSS R+ERFLQM D     +              N  +V+ TTPA YFH+LRRQ+ R FRKPLIV SPK LLR+    S+L +             G  F+ +I D +      + + +++LCSGK YY L ++R+         AI RVE+LCPFP + +Q+E+ RYP A + +W QEEP NMGA+T+++PR
Sbjct:  700 GIVILLPHGYDGAGPEHSSCRIERFLQMCDSTEEGVDG---------DTVNMFVVHPTTPAQYFHLLRRQMVRSFRKPLIVASPKMLLRYPAAVSSLEDI----------APGKTFRSVIGDSSAD---PKSVSKVILCSGKHYYALHKQREALGEQGRSSAIIRVEELCPFPLEALQQEIHRYPKAKDFIWSQEEPQNMGAWTFVAPR 886          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: DHTK1_MOUSE (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Mus musculus GN=Dhtkd1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.630e-42
Identity = 95/209 (45.45%), Postives = 126/209 (60.29%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSAS--DVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPR 618
            GLV+LLPHGYDG GPEHSS R+ERFLQM D     +              N  +V+ TTPA YFH+LRRQ+ R FRKPLIV SPK LLR+    S L E             GT FK +I D    S   + ++ L+ CSGK +Y L ++R+       D AI R+E+LCPFP D +Q+E+ +Y +  +++W QEEP NMG ++++SPR
Sbjct:  693 GLVILLPHGYDGAGPEHSSCRIERFLQMCDSAEEGVDS---------DTVNMFVVHPTTPAQYFHLLRRQMIRNFRKPLIVASPKMLLRYPAAVSTLEEM----------APGTAFKPVIGDS---SVDPKNVKTLIFCSGKHFYALLKQRESLGTKKHDFAIIRLEELCPFPLDALQQEMSKYKHVRDVIWSQEEPQNMGPWSFVSPR 879          
The following BLAST results are available for this feature:
BLAST of FC924883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_BRUC28.418e-5252.172-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_SCHPO5.456e-5146.542-oxoglutarate dehydrogenase, mitochondrial OS=Sch... [more]
ODO1_CAEBR3.537e-5046.732-oxoglutarate dehydrogenase, mitochondrial OS=Cae... [more]
ODO1_CAEEL1.029e-4947.172-oxoglutarate dehydrogenase, mitochondrial OS=Cae... [more]
ODO1_YEAST1.755e-4949.302-oxoglutarate dehydrogenase, mitochondrial OS=Sac... [more]
DHTK1_DICDI5.107e-4948.31Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_RALEH4.780e-4748.782-oxoglutarate dehydrogenase E1 component OS=Ralst... [more]
DHTK1_DANRE5.469e-4345.93Probable 2-oxoglutarate dehydrogenase E1 component... [more]
DHTK1_XENLA7.143e-4344.98Probable 2-oxoglutarate dehydrogenase E1 component... [more]
DHTK1_MOUSE4.630e-4245.45Probable 2-oxoglutarate dehydrogenase E1 component... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL02FM1 TF Citrus clementina cDNA clone KN0AAP1YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924883 ID=FC924883; Name=FC924883; organism=Citrus clementina; type=EST; length=644bp
GGACTTGTTGTGCTGCTCCCACATGGTTATGATGGTCAGGGCCCTGAACA
TTCAAGTGCACGATTGGAGCGTTTCCTTCAGATGAGTGATGACAATCCAT
TTGTTATACCTGAGATGGATCCAACTCTTCGGAAACAAATTCAAGAATGT
AACTGGCAGATTGTGAATGTTACAACTCCTGCTAATTATTTCCATGTTTT
GCGGCGTCAGATACACAGGGGATTCCGTAAGCCTCTCATCGTGATGTCAC
CCAAAAACCTGTTGCGTCACAAGGACTGCAAATCAAATCTTTCCGAGTTT
GATGATGTCCAAGGTCACCCTGGTTTTGACAAACAAGGGACCAGATTTAA
GCGGCTTATTAAGGATCAGAATGGGCACTCTGATCTTGAGGAGGGTATCA
GACGTCTGGTTCTTTGTTCTGGAAAGGTTTATTACGAGCTTGATGAAGAG
CGGAAGAAGCGCAGTGCAAGTGATGTTGCAATTTGCAGGGTGGAACAGCT
TTGTCCTTTCCCATATGACCTGGTTCAGCGTGAGCTTAAACGATATCCAA
ATGCCGAGATCGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGCGTAC
ACCTACATTTCACCCCGACTTGCCACTGCCATGAAAGCATTGGG
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