FC924883

Overview
NameFC924883
Unique NameFC924883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1790 contig Ccv1_Contig1790:10..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_RICTY (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia typhi GN=sucA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.668e-39
Identity = 99/213 (46.48%), Postives = 126/213 (59.15%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAE-IVWCQEEPMNMGAYTYISPRLATAMK 636
            GLVVLLPH ++GQGPEHSSARLERFLQ++ +                   N  I   TTPA+ FH+LRRQI    RKPLIVMSPK+LLRHK   S L E            + T F  ++ D+    D +  I +++LCSGKVYY+L  +R     S++ I R+EQL PF   LV   LK+Y  A+  +WCQEEP NMGA+ YI+  L  A+K
Sbjct:  708 GLVVLLPHAFEGQGPEHSSARLERFLQLAAEE------------------NMYITYPTTPASIFHLLRRQILESIRKPLIVMSPKSLLRHKYAVSKLDELG----------ENTTFIPVL-DEVTKID-KNNITKVILCSGKVYYDLFAKRVHN--SNIVIIRLEQLYPFEKTLVASLLKKYNKAQAFIWCQEEPKNMGAWNYIAEHLNDALK 888          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: DHTK1_PONAB (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Pongo abelii GN=DHTKD1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.791e-39
Identity = 94/209 (44.98%), Postives = 122/209 (58.37%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSAS--DVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPR 618
            G+V LLPHG+DG GP+HSS R+ERFLQM D     +              N  +V+ TTPA YFH+LRRQ+ R FRKPLIV SPK LLR     S L E             GT F  +I D    S   + ++ LV CSGK +Y L ++R+   A   D AI RVE+LCPFP D +Q+E+ +Y +  + +W QEEP NMG + ++SPR
Sbjct:  692 GIVTLLPHGHDGAGPDHSSCRIERFLQMCDSAEEGVDG---------DTVNMFVVHPTTPAQYFHLLRRQMVRNFRKPLIVASPKMLLRLPAAVSTLQEM----------APGTTFNPVIGDS---SVDPKKVKTLVFCSGKHFYSLMKQRESLGAKKHDFAIIRVEELCPFPLDSLQQEMSKYKHVKDHIWSQEEPQNMGPWLFVSPR 878          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_RICCN (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia conorii GN=sucA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.258e-39
Identity = 100/213 (46.95%), Postives = 124/213 (58.22%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRLATAMK 636
            GLVVLLPH ++GQGPEHSSARLERFLQ++ +N                  N  +   TTPA+ FH+LRRQI    RKPLIVMSPK+LLRHK   S L E            + T F  ++ D+    D    I +++LCSGKVYY+L E R     S++AI R+EQL PF   LV   LK+Y    E +WCQEEP NMG + YI   L  A+K
Sbjct:  707 GLVVLLPHAFEGQGPEHSSARLERFLQLAAEN------------------NMYVTYPTTPASIFHLLRRQILDDTRKPLIVMSPKSLLRHKYAVSKLDELG----------ENTTFLPVL-DEVTKVD-TNNITKVILCSGKVYYDLFEMRGNN--SNIAIIRLEQLYPFEKKLVASLLKKYNRTQEFIWCQEEPKNMGTWCYIVSHLNDALK 887          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_RICFE (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia felis GN=sucA PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 8.173e-39
Identity = 97/213 (45.54%), Postives = 123/213 (57.75%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRLATAMK 636
            GLVVLLPH ++GQGPEHSSARLERFLQ++ ++                  N  +   TTPA+ FH+LRRQI    RKPLI+MSPK+LLRHK   S L E            + T F  ++ + N        I +++LCSGKVYY+L E R     S++AI R+EQL PF   LV   LK+Y    E +WCQEEP NMGA+ YI   L   +K
Sbjct:  756 GLVVLLPHAFEGQGPEHSSARLERFLQLAAED------------------NMYVTYPTTPASIFHLLRRQILDDTRKPLIIMSPKSLLRHKYAVSKLDELG----------ENTTFLPVLDEVNKVD--TNNITKVILCSGKVYYDLFEMRGNN--SNIAIIRLEQLYPFEKKLVASLLKKYNRTQEFIWCQEEPKNMGAWRYIVSHLNDVLK 936          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_LEPIN (2-oxoglutarate dehydrogenase E1 component OS=Leptospira interrogans GN=sucA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.821e-38
Identity = 89/208 (42.79%), Postives = 130/208 (62.50%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRL 621
            GL++LLPHGY+GQGPEHSSARLERFLQ+          +D          N Q+ N+TT A YFH+LRRQ+ R +RKPL++++PK+LLR     ++LS  +D+        QG  F+ ++ D +G     + I ++V  +GKVYY+L + + +    +VA+ RVEQ+ PFP   +Q  LK + NA + VWCQEEP N GA+ ++  R+
Sbjct:  701 GLIMLLPHGYEGQGPEHSSARLERFLQLC--------ALD----------NMQVCNLTTAAQYFHLLRRQMLRNYRKPLVIVTPKSLLRF---PASLSPVEDI-------LQGA-FREILIDDSGSK--PDKIEKVVFSAGKVYYDLMKYKDENKIKNVALVRVEQIYPFPAKEIQSSLKTFKNAKQFVWCQEEPKNQGAWFFVRERI 877          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_LEPIC (2-oxoglutarate dehydrogenase E1 component OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=sucA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.821e-38
Identity = 89/208 (42.79%), Postives = 130/208 (62.50%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRL 621
            GL++LLPHGY+GQGPEHSSARLERFLQ+          +D          N Q+ N+TT A YFH+LRRQ+ R +RKPL++++PK+LLR     ++LS  +D+        QG  F+ ++ D +G     + I ++V  +GKVYY+L + + +    +VA+ RVEQ+ PFP   +Q  LK + NA + VWCQEEP N GA+ ++  R+
Sbjct:  701 GLIMLLPHGYEGQGPEHSSARLERFLQLC--------ALD----------NMQVCNLTTAAQYFHLLRRQMLRNYRKPLVIVTPKSLLRF---PASLSPVEDI-------LQGA-FREILIDDSGSK--PDKIEKVVFSAGKVYYDLMKYKDENKIKNVALVRVEQIYPFPAKEIQSSLKTFKNAKQFVWCQEEPKNQGAWFFVRERI 877          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_RICPR (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia prowazekii GN=sucA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.378e-38
Identity = 98/213 (46.01%), Postives = 124/213 (58.22%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAE-IVWCQEEPMNMGAYTYISPRLATAMK 636
            GLVVLLPH ++GQGPEHSSARLERFLQ++ +                   N  I   TTPA+ FH+LRRQI    RKPLIVMSPK+LLRHK   S L E            + T F  ++ D+    D    + +++LCSGKVYY+L   R     S++ I R+EQL PF   LV   LK+Y  A+  +WCQEEP NMGA+ YI+  L  A+K
Sbjct:  707 GLVVLLPHAFEGQGPEHSSARLERFLQLAAEE------------------NMYITYPTTPASIFHLLRRQILESTRKPLIVMSPKSLLRHKYAVSKLDELG----------ENTTFIPIL-DEVTKID-TNNVTKVILCSGKVYYDLFAMRTNN--SNIVIIRLEQLYPFEKKLVASLLKKYNKAQAFIWCQEEPKNMGAWHYIATHLNDALK 887          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_HAEIN (2-oxoglutarate dehydrogenase E1 component OS=Haemophilus influenzae GN=sucA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.036e-38
Identity = 91/202 (45.05%), Postives = 129/202 (63.86%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLE-EGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAY 600
            GLV+LLPHGY+GQGPEHSSARLER+LQ+                    E N Q+   +TPA  +H+LRRQ  R  R+PLI +SPK+LLRH    S+L E  +          GT F+ +I + +   +L+ + ++R+V+CSGKVYY+L E+R+  +  DVAI R+EQL PFP++ V++ L+ Y +  + VWCQEEP+N GA+
Sbjct:  716 GLVMLLPHGYEGQGPEHSSARLERYLQLC------------------AEQNMQVCVPSTPAQVYHMLRRQSLRKMRRPLIAISPKSLLRHPLAVSSLDELIN----------GT-FQTVIGEID---ELDPKDVKRVVMCSGKVYYDLLEQRRANNQKDVAIIRIEQLYPFPHEDVKKALEPYAHVTDYVWCQEEPLNQGAW 885          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_AZOVI (2-oxoglutarate dehydrogenase E1 component OS=Azotobacter vinelandii GN=sucA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.180e-37
Identity = 87/201 (43.28%), Postives = 116/201 (57.71%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAE-IVWCQEEPMNMGAY 600
            GL +LLPHGY+GQGPEHSSARLER+LQ+                    E N Q+   TTPA  +H+LRRQ+ R  RKPL+ ++PK+LLRHK   S L +      HP   +  +   + ++             RLVLCSGKVYY+L ++R      D+AI R+EQL PFP + +   +  Y N + +VWCQEEPMN GA+
Sbjct:  721 GLTMLLPHGYEGQGPEHSSARLERYLQLC------------------AEQNIQVCVPTTPAQVYHMLRRQVIRPLRKPLVALTPKSLLRHKSAISTLEDLALGSFHPVLPEVDSLDPKKVE-------------RLVLCSGKVYYDLLDKRHAEGREDIAIVRIEQLYPFPEEELAEVMAPYTNLKHVVWCQEEPMNQGAW 890          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACHD (2-oxoglutarate dehydrogenase E1 component OS=Bacillus halodurans GN=odhA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.629e-37
Identity = 92/217 (42.40%), Postives = 126/217 (58.06%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASD---VAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRLATA 630
            GLV LLPHGY+GQGPEHSSARLERFL ++ +N                  NW I N T+ A YFH+LRRQ   ++    +PLI+M+PK+LLR++   S++ E               RFK +++  N   +  E + R+VLCSGK+  +L +  +K +  D   V I RVEQL PFP + +Q    RYPN  EIVW QEEP NMGA+ ++  ++  A
Sbjct:  719 GLVCLLPHGYEGQGPEHSSARLERFLVLAAEN------------------NWTIANCTSAAQYFHILRRQAAILNTDSVRPLIMMTPKSLLRNQKVASSVEELTT-----------GRFKTVLEQPN-LGESHEKVERIVLCSGKIAIDLQDRIEKEADKDWDWVHIVRVEQLYPFPKEPLQEIFARYPNVKEIVWSQEEPRNMGAWPFVQSKIRRA 905          
The following BLAST results are available for this feature:
BLAST of FC924883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_RICTY3.668e-3946.482-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
DHTK1_PONAB4.791e-3944.98Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_RICCN6.258e-3946.952-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
ODO1_RICFE8.173e-3945.542-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
ODO1_LEPIN1.821e-3842.792-oxoglutarate dehydrogenase E1 component OS=Lepto... [more]
ODO1_LEPIC1.821e-3842.792-oxoglutarate dehydrogenase E1 component OS=Lepto... [more]
ODO1_RICPR2.378e-3846.012-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
ODO1_HAEIN9.036e-3845.052-oxoglutarate dehydrogenase E1 component OS=Haemo... [more]
ODO1_AZOVI1.180e-3743.282-oxoglutarate dehydrogenase E1 component OS=Azoto... [more]
ODO1_BACHD2.629e-3742.402-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL02FM1 TF Citrus clementina cDNA clone KN0AAP1YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924883 ID=FC924883; Name=FC924883; organism=Citrus clementina; type=EST; length=644bp
GGACTTGTTGTGCTGCTCCCACATGGTTATGATGGTCAGGGCCCTGAACA
TTCAAGTGCACGATTGGAGCGTTTCCTTCAGATGAGTGATGACAATCCAT
TTGTTATACCTGAGATGGATCCAACTCTTCGGAAACAAATTCAAGAATGT
AACTGGCAGATTGTGAATGTTACAACTCCTGCTAATTATTTCCATGTTTT
GCGGCGTCAGATACACAGGGGATTCCGTAAGCCTCTCATCGTGATGTCAC
CCAAAAACCTGTTGCGTCACAAGGACTGCAAATCAAATCTTTCCGAGTTT
GATGATGTCCAAGGTCACCCTGGTTTTGACAAACAAGGGACCAGATTTAA
GCGGCTTATTAAGGATCAGAATGGGCACTCTGATCTTGAGGAGGGTATCA
GACGTCTGGTTCTTTGTTCTGGAAAGGTTTATTACGAGCTTGATGAAGAG
CGGAAGAAGCGCAGTGCAAGTGATGTTGCAATTTGCAGGGTGGAACAGCT
TTGTCCTTTCCCATATGACCTGGTTCAGCGTGAGCTTAAACGATATCCAA
ATGCCGAGATCGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGCGTAC
ACCTACATTTCACCCCGACTTGCCACTGCCATGAAAGCATTGGG
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