FC924883

Overview
NameFC924883
Unique NameFC924883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1790 contig Ccv1_Contig1790:10..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_EXISA (2-oxoglutarate dehydrogenase E1 component OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=odhA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.649e-37
Identity = 89/213 (41.78%), Postives = 124/213 (58.22%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEE--RKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSSAR+ER+L ++                   E NW + N+++ A YFH+LRRQ   + +   +P+I+M+PK+LLRH    S +  F +    P            I +Q G  +  E + RLV C+GK+  +L E   + + S   + I RVE++ PFP   ++  + RYPNA EIVW QEEP NMGA+TYI PRL
Sbjct:  709 GLVMLLPHGYEGQGPEHSSARMERYLTLAG------------------EKNWTVANLSSAAQYFHILRRQAEMLGKEEIRPMIIMTPKSLLRHPLATSPVEAFTEESFKP------------IVEQPGLGENTEKVERLVFCTGKMAIDLAEAVGKSEESLDFLHIVRVEEIYPFPVREIRDVISRYPNAREIVWVQEEPKNMGAWTYIEPRL 891          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACA2 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus amyloliquefaciens (strain FZB42) GN=odhA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.958e-36
Identity = 89/214 (41.59%), Postives = 124/214 (57.94%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFR---KPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASD--VAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRLA 624
            GLV+LLPHGY+GQGPEHSS R+ERFLQ++ +N                  NW + N+T+ A YFH+LRRQ     R   +PL++M+PK+LLR+ +  S + E  +           +RFK  + +Q+G S   E + R+VL SGKV  ++ +   K       + I R+EQL PFP    +    + PN  EIVW QEEP NMGA++YISP L+
Sbjct:  717 GLVMLLPHGYEGQGPEHSSGRVERFLQLAAEN------------------NWTVANLTSAAQYFHILRRQAKMLLREEIRPLVIMTPKSLLRNPNTVSEVQELSE-----------SRFKP-VYEQSGLSHAYEKVTRVVLSSGKVSIDISDHFNKMEGDKDWLHIARIEQLYPFPAKDTKELFAKLPNLQEIVWVQEEPQNMGAWSYISPYLS 900          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACSU (2-oxoglutarate dehydrogenase E1 component OS=Bacillus subtilis GN=odhA PE=3 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.105e-35
Identity = 89/213 (41.78%), Postives = 121/213 (56.81%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFR---KPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASD--VAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSS R+ERFLQ++ +N                  NW + N+T+ A YFH+LRRQ     R   +PL++M+PK+LLR+ +  S + E  + +  P            + +Q+G S   E + RLVL SGKV  ++ +   K       + I R+EQL PFP   V+    + PN  EIVW QEEP NMGA+ YISP L
Sbjct:  717 GLVMLLPHGYEGQGPEHSSGRIERFLQLAAEN------------------NWTVANLTSAAQYFHILRRQAKMLLREEIRPLVIMTPKSLLRNPNTVSEVQELSESRFQP------------VYEQSGLSHDYEKVTRLVLSSGKVSIDISDHFNKLEDGKEWLHIARIEQLYPFPAKGVKELFAKLPNLKEIVWVQEEPQNMGAWGYISPYL 899          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_GEOKA (2-oxoglutarate dehydrogenase E1 component OS=Geobacillus kaustophilus GN=odhA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.461e-35
Identity = 88/212 (41.51%), Postives = 122/212 (57.55%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASD-VAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSS R+ERFLQ++ +N                  NW + N++T A YFH+LRRQ   + R   +PLI+M+PK+LLRH    S+   F D    P            + +Q G       + R+V  +GK+  +L E+  K  + D + I R+E+L PFP + V+  + RYPN  E+VW QEEP NMGA+ Y+ PRL
Sbjct:  724 GLVMLLPHGYEGQGPEHSSGRVERFLQLAAEN------------------NWTVANLSTAAQYFHILRRQAALLTREEVRPLIIMTPKSLLRHPLAASDAEVFVDGAFSP------------VLEQPGLGADAGKVERIVFGTGKLMIDLAEQIGKMESLDWLHIVRIEELYPFPEEAVKDIIARYPNVKELVWVQEEPKNMGAWLYMEPRL 905          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BUCAP (2-oxoglutarate dehydrogenase E1 component OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sucA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.461e-35
Identity = 85/211 (40.28%), Postives = 120/211 (56.87%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRLATAM 633
            LV+ LPHGY+GQGPEHSSARLERFLQ+  +N                  N Q+   T  +  FH+LRRQI     KPLIV++PK+LLR+   +S+L                  FK +I + + +   ++ ++R++ CSGK+YY+L E R K   ++V + R+EQL PFP D +   LK Y    + +WCQEEP N GA+ YI   L+T +
Sbjct:  703 LVLFLPHGYEGQGPEHSSARLERFLQLCAEN------------------NIQVCIPTVSSQIFHLLRRQIFSNVYKPLIVLTPKSLLRNNVARSSLEVL-----------VNENFKNVINEIDKN---QKEVKRIIFCSGKIYYDLLEYRNKCDINNVLLIRIEQLYPFPKDEILTILKSYSYVQDFIWCQEEPHNQGAWFYIKDLLSTLL 881          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACSK (2-oxoglutarate dehydrogenase E1 component OS=Bacillus clausii (strain KSM-K16) GN=odhA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.482e-35
Identity = 86/213 (40.38%), Postives = 120/213 (56.34%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSA--SDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRL 621
            GLVVLLPHGY+G GPEHSS R+ERFL  + +N                  NW + N T+ A YFH+LRRQ   + +   +PLI+M+PK+LLR++   S  S F + +  P  ++             GH      ++R++LCSGK+  EL +   K     S V I RVE+L PFP   ++  LK +PN  E+ W QEEP NMGA+T++ PR+
Sbjct:  716 GLVVLLPHGYEGAGPEHSSGRVERFLSSAAEN------------------NWTVANCTSAAQYFHILRRQAKILQKNTVRPLIIMTPKSLLRNQVVASPTSAFTEGEFQPILEEPTL----------GHD--PNAVKRIILCSGKLAIELQDYVNKNDEDWSWVHIIRVEELYPFPRRAIRERLKEFPNLEEVKWVQEEPKNMGAWTFMEPRI 898          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACC0 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain AH820) GN=odhA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.160e-35
Identity = 84/215 (39.07%), Postives = 125/215 (58.14%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYY----ELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSSAR ERFLQ++ +N                  NW + N+T+ A YFH+LRRQ   +     +PL++M+PK+LLRH    S  S+  + +  P  +++    K               ++RLVL +GK+      E++ ++ + +  ++ I R+EQL PFP + VQ  +KR+ N  EI+W QEEP NMGA+ Y++P L
Sbjct:  712 GLVLLLPHGYEGQGPEHSSARPERFLQLAAEN------------------NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESDKHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKNLEEIIWVQEEPRNMGAWHYMAPIL 896          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACWK (2-oxoglutarate dehydrogenase E1 component OS=Bacillus weihenstephanensis (strain KBAB4) GN=odhA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.351e-35
Identity = 87/215 (40.47%), Postives = 124/215 (57.67%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEE----RKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSSAR ERFLQ++ +N                  NW + N+T+ A YFH+LRRQ   +     +PL++M+PK+LLRH    S  S+  + +  P  +++    K               ++RLVL +GK+  +L  E    + + S  +V + RVEQL PFP + VQ  +KR+ N  EI+W QEEP NMGA+ Y++P L
Sbjct:  712 GLVLLLPHGYEGQGPEHSSARPERFLQLAAEN------------------NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGAK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYSLDEVHMVRVEQLYPFPAEKVQSIIKRFKNLEEIIWVQEEPRNMGAWHYMAPIL 896          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACCR (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=odhA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.351e-35
Identity = 85/215 (39.53%), Postives = 124/215 (57.67%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEE----RKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSSAR ERFLQ++ +N                  NW + N+T+ A YFH+LRRQ   +     +PL++M+PK+LLRH    S  S+  + +  P  +++    K               ++RLVL +GK+  +L  E    + + +  +V + R+EQL PFP + VQ  +KR+ N  EI+W QEEP NMGA+ Y++P L
Sbjct:  712 GLVLLLPHGYEGQGPEHSSARPERFLQLAAEN------------------NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGMK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEVHVVRIEQLYPFPAEKVQSIIKRFKNLEEIIWVQEEPRNMGAWHYMAPIL 896          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACCQ (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain Q1) GN=odhA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.351e-35
Identity = 85/215 (39.53%), Postives = 124/215 (57.67%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEE----RKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSSAR ERFLQ++ +N                  NW + N+T+ A YFH+LRRQ   +     +PL++M+PK+LLRH    S  S+  + +  P  +++    K               ++RLVL +GK+  +L  E    + + +  ++ I R+EQL PFP + VQ  +KR+ N  EI+W QEEP NMGA+ Y++P L
Sbjct:  712 GLVLLLPHGYEGQGPEHSSARPERFLQLAAEN------------------NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGMK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKNLEEIIWVQEEPRNMGAWHYMAPIL 896          
The following BLAST results are available for this feature:
BLAST of FC924883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_EXISA7.649e-3741.782-oxoglutarate dehydrogenase E1 component OS=Exigu... [more]
ODO1_BACA24.958e-3641.592-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACSU1.105e-3541.782-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_GEOKA2.461e-3541.512-oxoglutarate dehydrogenase E1 component OS=Geoba... [more]
ODO1_BUCAP2.461e-3540.282-oxoglutarate dehydrogenase E1 component OS=Buchn... [more]
ODO1_BACSK5.482e-3540.382-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACC07.160e-3539.072-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACWK9.351e-3540.472-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACCR9.351e-3539.532-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACCQ9.351e-3539.532-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL02FM1 TF Citrus clementina cDNA clone KN0AAP1YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924883 ID=FC924883; Name=FC924883; organism=Citrus clementina; type=EST; length=644bp
GGACTTGTTGTGCTGCTCCCACATGGTTATGATGGTCAGGGCCCTGAACA
TTCAAGTGCACGATTGGAGCGTTTCCTTCAGATGAGTGATGACAATCCAT
TTGTTATACCTGAGATGGATCCAACTCTTCGGAAACAAATTCAAGAATGT
AACTGGCAGATTGTGAATGTTACAACTCCTGCTAATTATTTCCATGTTTT
GCGGCGTCAGATACACAGGGGATTCCGTAAGCCTCTCATCGTGATGTCAC
CCAAAAACCTGTTGCGTCACAAGGACTGCAAATCAAATCTTTCCGAGTTT
GATGATGTCCAAGGTCACCCTGGTTTTGACAAACAAGGGACCAGATTTAA
GCGGCTTATTAAGGATCAGAATGGGCACTCTGATCTTGAGGAGGGTATCA
GACGTCTGGTTCTTTGTTCTGGAAAGGTTTATTACGAGCTTGATGAAGAG
CGGAAGAAGCGCAGTGCAAGTGATGTTGCAATTTGCAGGGTGGAACAGCT
TTGTCCTTTCCCATATGACCTGGTTCAGCGTGAGCTTAAACGATATCCAA
ATGCCGAGATCGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGCGTAC
ACCTACATTTCACCCCGACTTGCCACTGCCATGAAAGCATTGGG
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