FC924883

Overview
NameFC924883
Unique NameFC924883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1790 contig Ccv1_Contig1790:10..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCBP (2-oxoglutarate decarboxylase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=kgd PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.493e-32
Identity = 78/203 (38.42%), Postives = 120/203 (59.11%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKD---QNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+SAR+ERFLQ+                    E +  I   +TP+NYFH+LRR    G ++PLIV +PK++LRHK   S + +F ++           +F+ ++++   ++G  D  + + R++L SGK+YYEL   + K + +D+AI R+EQL P P   ++  L RY N  E  W QEEP N GA+
Sbjct: 1009 VVLLLPHGHEGQGPDHTSARIERFLQLW------------------AEGSMTIAMPSTPSNYFHLLRRHALDGIQRPLIVFTPKSMLRHKAAVSEIKDFTEI-----------KFRSVLEEPTYEDGIGDRNK-VSRILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYENVKEFFWVQEEPANQGAW 1181          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCBO (2-oxoglutarate decarboxylase OS=Mycobacterium bovis GN=kgd PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.493e-32
Identity = 78/203 (38.42%), Postives = 120/203 (59.11%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKD---QNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+SAR+ERFLQ+                    E +  I   +TP+NYFH+LRR    G ++PLIV +PK++LRHK   S + +F ++           +F+ ++++   ++G  D  + + R++L SGK+YYEL   + K + +D+AI R+EQL P P   ++  L RY N  E  W QEEP N GA+
Sbjct: 1009 VVLLLPHGHEGQGPDHTSARIERFLQLW------------------AEGSMTIAMPSTPSNYFHLLRRHALDGIQRPLIVFTPKSMLRHKAAVSEIKDFTEI-----------KFRSVLEEPTYEDGIGDRNK-VSRILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYENVKEFFWVQEEPANQGAW 1181          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BUCAI (2-oxoglutarate dehydrogenase E1 component OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sucA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.546e-32
Identity = 83/212 (39.15%), Postives = 120/212 (56.60%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDD-VQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRY-PNAEIVWCQEEPMNMGAYTYISPRLATAM 633
            LVVLLPHGY+GQGPEHSS+R+ERFLQ+                    E N QI   TT +  FH+ R+QI     KPLI+ +PK+LLR+    S+   FDD V G         +F++++ + +  +  E    RL+ CSGK+YY+L   R+++  + + + R+EQL PFP   + + LK Y    + +WCQEEP N GA+ YI   L+  +
Sbjct:  691 LVVLLPHGYEGQGPEHSSSRIERFLQL------------------CAEENMQICIPTTSSQIFHIFRKQIFDKILKPLIIFTPKSLLRNPMASSS---FDDLVYG---------KFQKILDEVDNVNKKE---IRLIFCSGKIYYDLLRNRREKKINSIILIRIEQLYPFPEGEILKILKNYFYIKDFIWCQEEPYNQGAWFYIKDCLSNIL 869          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCSS (2-oxoglutarate decarboxylase OS=Mycobacterium sp. (strain MCS) GN=kgd PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 79/203 (38.92%), Postives = 117/203 (57.64%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQ---NGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+S R+ERFLQ+                    E +  I   +TPANYFH+LRR    G ++PLIV +PK++LR+K   S++ +F +            +F+ ++++    +G  D  + + R++L SGK+YYEL   + K S  DVAI R+EQL P P   +   L +YPN  E  W QEEP N GA+
Sbjct: 1046 VVLLLPHGHEGQGPDHTSGRIERFLQLW------------------AEGSMTIALPSTPANYFHLLRRHSLDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-----------QKFRSVLEEPTYTDGDGDRNK-VTRILLTSGKIYYELVARKNKESRDDVAIVRIEQLAPLPKRRLAETLDKYPNVEEKFWVQEEPANQGAW 1218          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCSK (2-oxoglutarate decarboxylase OS=Mycobacterium sp. (strain KMS) GN=kgd PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 79/203 (38.92%), Postives = 117/203 (57.64%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQ---NGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+S R+ERFLQ+                    E +  I   +TPANYFH+LRR    G ++PLIV +PK++LR+K   S++ +F +            +F+ ++++    +G  D  + + R++L SGK+YYEL   + K S  DVAI R+EQL P P   +   L +YPN  E  W QEEP N GA+
Sbjct: 1046 VVLLLPHGHEGQGPDHTSGRIERFLQLW------------------AEGSMTIALPSTPANYFHLLRRHSLDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-----------QKFRSVLEEPTYTDGDGDRNK-VTRILLTSGKIYYELVARKNKESRDDVAIVRIEQLAPLPKRRLAETLDKYPNVEEKFWVQEEPANQGAW 1218          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCSJ (2-oxoglutarate decarboxylase OS=Mycobacterium sp. (strain JLS) GN=kgd PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 79/203 (38.92%), Postives = 117/203 (57.64%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQ---NGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+S R+ERFLQ+                    E +  I   +TPANYFH+LRR    G ++PLIV +PK++LR+K   S++ +F +            +F+ ++++    +G  D  + + R++L SGK+YYEL   + K S  DVAI R+EQL P P   +   L +YPN  E  W QEEP N GA+
Sbjct: 1041 VVLLLPHGHEGQGPDHTSGRIERFLQLW------------------AEGSMTIALPSTPANYFHLLRRHSLDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-----------QKFRSVLEEPTYTDGDGDRNK-VTRILLTSGKIYYELVARKNKESRDDVAIVRIEQLAPLPKRRLAETLDKYPNVDEKFWVQEEPANQGAW 1213          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BUCBP (Oxoglutarate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sucA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.409e-32
Identity = 77/202 (38.12%), Postives = 119/202 (58.91%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTY 606
            LV+LLPHGY+GQGPEHSSAR+ER+LQ+S +N                  N +I+  T  +  +H++R+Q     +KPLI+MSPK+LLR     S+LSE  +            +F+ +I D+  + D ++ ++R++LCSGK+YY+L  +R+     ++ I R+EQ+ P P   +   L  Y +  + +WCQEEP N GA+ Y
Sbjct:  696 LVMLLPHGYEGQGPEHSSARIERYLQLSANN------------------NIKIIIPTISSQIYHIIRKQAFSLIKKPLIIMSPKSLLRFPLAASSLSELSN-----------GKFRTVI-DEIDNLDTKK-VQRIILCSGKIYYDLLTQRRINQQKNIVILRIEQIYPRPTKKLSAILYNYKDVHDYIWCQEEPCNQGAWLY 866          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCLE (2-oxoglutarate decarboxylase OS=Mycobacterium leprae GN=kgd PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.156e-31
Identity = 75/204 (36.76%), Postives = 117/204 (57.35%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNP--FVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEE--GIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+S R+ERFLQ+  +    F +P                    +TP+NYFH+LRR    G ++PLIV +PK++LR+K   S++ +F ++           +F+ ++++      +++   + R++L  GK+YYEL   + K +  DVAI R+EQL P P   +   L RY NA E  W QEEP N GA+
Sbjct: 1017 VVLLLPHGHEGQGPDHTSGRIERFLQLWAEGSMTFAVP--------------------STPSNYFHLLRRHALDGIKRPLIVFTPKSMLRNKAAVSDIKDFTEI-----------KFRSVLEEPTYEDSIDDRSKVTRVLLTCGKLYYELAARKIKDNRDDVAIVRIEQLAPLPRRRLGETLDRYENAKEFFWVQEEPANQGAW 1189          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCVP (2-oxoglutarate decarboxylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=kgd PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.272e-31
Identity = 79/203 (38.92%), Postives = 114/203 (56.16%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQN---GHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAE-IVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+S R+ERFL +                    E +  I   +TPANYFH+LRR    G  +PLIV +PK++LR+K   S+L +F ++           +F+ ++++     G  D  +  +R++L SGK+YYEL   + K    DVAI R+EQL P P   +   L  YPNAE   W QEEP N GA+
Sbjct: 1021 VVLLLPHGHEGQGPDHTSGRIERFLLLW------------------AEGSMTIAMPSTPANYFHLLRRHGLDGIHRPLIVFTPKSMLRNKAAVSDLKDFTEM-----------KFRSVLEEPTYTEGTGDRSKA-KRILLTSGKLYYELAARKSKEGRDDVAILRLEQLAPLPKRRLAATLDEYPNAEQYFWVQEEPANQGAW 1193          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAS1 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.935e-30
Identity = 75/211 (35.55%), Postives = 117/211 (55.45%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAE-IVWCQEEPMNMGAYTYISPRL 621
            GL + LPH ++GQGPEHSSARLERFLQ++ +N                  N  IVN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     +S+F              +F+ ++ + +     +  +++++L SGK++ +L E   K     + +  VE+L PFP D +   L   PN E + W QEEP N GA++++ P L
Sbjct:  712 GLTLFLPHSFEGQGPEHSSARLERFLQLAGEN------------------NSTIVNLSSSSNYFHLLRAQAANLGTQSMRPLVVMSPKSLLRNKTVADPISKF-----------TSGKFEPILPEAHD----KASVKKVILASGKMFIDLKEYLTKNPNKSILLVAVERLYPFPADEIDALLSELPNLEHVAWVQEEPKNQGAWSFVYPYL 889          
The following BLAST results are available for this feature:
BLAST of FC924883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
KGD_MYCBP1.493e-3238.422-oxoglutarate decarboxylase OS=Mycobacterium bovi... [more]
KGD_MYCBO1.493e-3238.422-oxoglutarate decarboxylase OS=Mycobacterium bovi... [more]
ODO1_BUCAI2.546e-3239.152-oxoglutarate dehydrogenase E1 component OS=Buchn... [more]
KGD_MYCSS4.344e-3238.922-oxoglutarate decarboxylase OS=Mycobacterium sp. ... [more]
KGD_MYCSK4.344e-3238.922-oxoglutarate decarboxylase OS=Mycobacterium sp. ... [more]
KGD_MYCSJ4.344e-3238.922-oxoglutarate decarboxylase OS=Mycobacterium sp. ... [more]
ODO1_BUCBP7.409e-3238.12Oxoglutarate dehydrogenase OS=Buchnera aphidicola ... [more]
KGD_MYCLE2.156e-3136.762-oxoglutarate decarboxylase OS=Mycobacterium lepr... [more]
KGD_MYCVP6.272e-3138.922-oxoglutarate decarboxylase OS=Mycobacterium vanb... [more]
ODO1_STAS16.935e-3035.552-oxoglutarate dehydrogenase E1 component OS=Staph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL02FM1 TF Citrus clementina cDNA clone KN0AAP1YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924883 ID=FC924883; Name=FC924883; organism=Citrus clementina; type=EST; length=644bp
GGACTTGTTGTGCTGCTCCCACATGGTTATGATGGTCAGGGCCCTGAACA
TTCAAGTGCACGATTGGAGCGTTTCCTTCAGATGAGTGATGACAATCCAT
TTGTTATACCTGAGATGGATCCAACTCTTCGGAAACAAATTCAAGAATGT
AACTGGCAGATTGTGAATGTTACAACTCCTGCTAATTATTTCCATGTTTT
GCGGCGTCAGATACACAGGGGATTCCGTAAGCCTCTCATCGTGATGTCAC
CCAAAAACCTGTTGCGTCACAAGGACTGCAAATCAAATCTTTCCGAGTTT
GATGATGTCCAAGGTCACCCTGGTTTTGACAAACAAGGGACCAGATTTAA
GCGGCTTATTAAGGATCAGAATGGGCACTCTGATCTTGAGGAGGGTATCA
GACGTCTGGTTCTTTGTTCTGGAAAGGTTTATTACGAGCTTGATGAAGAG
CGGAAGAAGCGCAGTGCAAGTGATGTTGCAATTTGCAGGGTGGAACAGCT
TTGTCCTTTCCCATATGACCTGGTTCAGCGTGAGCTTAAACGATATCCAA
ATGCCGAGATCGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGCGTAC
ACCTACATTTCACCCCGACTTGCCACTGCCATGAAAGCATTGGG
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