FC924883

Overview
NameFC924883
Unique NameFC924883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1790 contig Ccv1_Contig1790:10..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAES (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus epidermidis (strain ATCC 12228) GN=odhA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.057e-30
Identity = 78/211 (36.97%), Postives = 116/211 (54.98%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAE-IVWCQEEPMNMGAYTYISPRL 621
            GL + LPH ++GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PLIVMSPK+LLR+K     + EF               FK +I +       E+ +++++L SGK+Y +L E   K     + +  VE+L PFP + ++  LK  P+ E + W QEEP N GA+ ++ P L
Sbjct:  714 GLTLFLPHAFEGQGPEHSSARLERFLQLAAEN------------------NSTVVNLSSASNYFHLLRAQAASLDTLEMRPLIVMSPKSLLRNKTVAKPIDEF-----------TSGGFKPIITEDID----EQKVKKVILASGKMYIDLKEYLAKNPNDSILLIAVERLYPFPEEEIKEVLKSLPHLENVSWVQEEPKNQGAWLFVYPYL 891
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAEQ (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=odhA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.057e-30
Identity = 78/211 (36.97%), Postives = 116/211 (54.98%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAE-IVWCQEEPMNMGAYTYISPRL 621
            GL + LPH ++GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PLIVMSPK+LLR+K     + EF               FK +I +       E+ +++++L SGK+Y +L E   K     + +  VE+L PFP + ++  LK  P+ E + W QEEP N GA+ ++ P L
Sbjct:  714 GLTLFLPHAFEGQGPEHSSARLERFLQLAAEN------------------NSTVVNLSSASNYFHLLRAQAASLDTLEMRPLIVMSPKSLLRNKTVAKPIDEF-----------TSGGFKPIITEDID----EQKVKKVILASGKMYIDLKEYLAKNPNDSILLIAVERLYPFPEEEIKEVLKSLPHLENVSWVQEEPKNQGAWLFVYPYL 891
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAHJ (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus haemolyticus (strain JCSC1435) GN=odhA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.018e-29
Identity = 78/211 (36.97%), Postives = 114/211 (54.03%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAEIV-WCQEEPMNMGAYTYISPRL 621
            GL + LPH ++GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PLIVMSPK+LLR+K     + +F      P           +++D N     +E + +LVL SGK++ +L E   K     + +  V++L PFP   ++  L   PN E V W QEEP N GA+ ++ P L
Sbjct:  714 GLTLFLPHAFEGQGPEHSSARLERFLQLAAEN------------------NSTVVNLSSSSNYFHLLRAQAKSLGTEAMRPLIVMSPKSLLRNKTVAKPIDQFTSGGFKP----------IIVEDGN-----KEKVTKLVLASGKMFIDLKEHLAKNPDDSILLVAVDRLYPFPEGEIKEVLNELPNLETVSWVQEEPKNQGAWLFVYPYL 891
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAAW (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain MW2) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAAT (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAAS (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain MSSA476) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAAR (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain MRSA252) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAAM (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=odhA PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAAE (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain Newman) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAAC (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain COL) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
The following BLAST results are available for this feature:
BLAST of FC924883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_STAES9.057e-3036.972-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAEQ9.057e-3036.972-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAHJ2.018e-2936.972-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAAW5.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAAT5.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAAS5.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAAR5.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAAM5.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAAE5.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAAC5.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL02FM1 TF Citrus clementina cDNA clone KN0AAP1YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924883 ID=FC924883; Name=FC924883; organism=Citrus clementina; type=EST; length=644bp
GGACTTGTTGTGCTGCTCCCACATGGTTATGATGGTCAGGGCCCTGAACA
TTCAAGTGCACGATTGGAGCGTTTCCTTCAGATGAGTGATGACAATCCAT
TTGTTATACCTGAGATGGATCCAACTCTTCGGAAACAAATTCAAGAATGT
AACTGGCAGATTGTGAATGTTACAACTCCTGCTAATTATTTCCATGTTTT
GCGGCGTCAGATACACAGGGGATTCCGTAAGCCTCTCATCGTGATGTCAC
CCAAAAACCTGTTGCGTCACAAGGACTGCAAATCAAATCTTTCCGAGTTT
GATGATGTCCAAGGTCACCCTGGTTTTGACAAACAAGGGACCAGATTTAA
GCGGCTTATTAAGGATCAGAATGGGCACTCTGATCTTGAGGAGGGTATCA
GACGTCTGGTTCTTTGTTCTGGAAAGGTTTATTACGAGCTTGATGAAGAG
CGGAAGAAGCGCAGTGCAAGTGATGTTGCAATTTGCAGGGTGGAACAGCT
TTGTCCTTTCCCATATGACCTGGTTCAGCGTGAGCTTAAACGATATCCAA
ATGCCGAGATCGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGCGTAC
ACCTACATTTCACCCCGACTTGCCACTGCCATGAAAGCATTGGG
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