FC928836

Overview
NameFC928836
Unique NameFC928836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig952 contig Ccv1_Contig952:1395..2132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928836 vs. ExPASy Swiss-Prot
Match: INO1_ORYSJ (Inositol-3-phosphate synthase OS=Oryza sativa subsp. japonica GN=INO1 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.540e-69
Identity = 129/134 (96.27%), Postives = 133/134 (99.25%), Query Frame = 3
Query:    9 GEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 410
            GEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGK+TIVLHNTCEDSLLAAPI+LDLVLLAELSTRIQLKAEGE KFHSFHPVATILSYLTKAPLVPPGTPVVNAL+KQRAMLENI+RACVGLAPENNMILEYK
Sbjct:  377 GEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKSTIVLHNTCEDSLLAAPIILDLVLLAELSTRIQLKAEGEEKFHSFHPVATILSYLTKAPLVPPGTPVVNALAKQRAMLENIMRACVGLAPENNMILEYK 510          
BLAST of FC928836 vs. ExPASy Swiss-Prot
Match: INO1_HORVU (Inositol-3-phosphate synthase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.659e-69
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 3
Query:    6 PGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 410
            PGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGK+TIVLHNTCEDSLL API+LDLVLLAELSTRIQLKAEGE K HSFHPVATILSYLTKAPLVPPGTPVVNAL+KQRAMLENI+RACVGLAPENNMILEYK
Sbjct:  376 PGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKSTIVLHNTCEDSLLRAPIILDLVLLAELSTRIQLKAEGEDKLHSFHPVATILSYLTKAPLVPPGTPVVNALAKQRAMLENIMRACVGLAPENNMILEYK 510          
BLAST of FC928836 vs. ExPASy Swiss-Prot
Match: INO1_BRANA (Inositol-3-phosphate synthase OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.646e-68
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 3
Query:    6 PGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 410
            PGEHPDHVVVIKYVPYV DSKRAMDEYTSEIFMGGKNTIV+HNTCEDSLLAAPI+LDLVLLAE+STRIQ K+E EGKFHSFHPVAT LSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK
Sbjct:  376 PGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFMGGKNTIVMHNTCEDSLLAAPIILDLVLLAEISTRIQFKSEKEGKFHSFHPVATKLSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 510          
BLAST of FC928836 vs. ExPASy Swiss-Prot
Match: INO3_ARATH (Probable inositol-3-phosphate synthase isozyme 3 OS=Arabidopsis thaliana GN=At5g10170 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.394e-67
Identity = 124/135 (91.85%), Postives = 131/135 (97.04%), Query Frame = 3
Query:    6 PGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 410
            PGEHPDHVVVIKYVP VGDSKRAMDEYTSEIFMGGKNTIV+HNTCEDSLLAAPI+LDLVLLAEL+TRIQ  +E EGKFHSFHPVAT+LSYL+KAPLVPPGTPVVNALSKQRAMLEN+LRACVGLAPENNMILEYK
Sbjct:  376 PGEHPDHVVVIKYVPCVGDSKRAMDEYTSEIFMGGKNTIVMHNTCEDSLLAAPIILDLVLLAELTTRIQFMSENEGKFHSFHPVATLLSYLSKAPLVPPGTPVVNALSKQRAMLENVLRACVGLAPENNMILEYK 510          
BLAST of FC928836 vs. ExPASy Swiss-Prot
Match: INO1_CITPA (Inositol-3-phosphate synthase OS=Citrus paradisi PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.408e-61
Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 3
Query:   36 IKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 410
            IKYVPYV   +RAMDEYTSEIFMGGK+TIVLHNTCEDSLLAAPI+LDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK
Sbjct:  384 IKYVPYVA-IERAMDEYTSEIFMGGKSTIVLHNTCEDSLLAAPIILDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 507          
BLAST of FC928836 vs. ExPASy Swiss-Prot
Match: INO1_DICDI (Inositol-3-phosphate synthase OS=Dictyostelium discoideum GN=ino1 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.685e-53
Identity = 97/134 (72.39%), Postives = 118/134 (88.06%), Query Frame = 3
Query:    9 GEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 410
            GEHPDHV+VIKYVPYVGDSKRAMDEYTS+IFMGG NTIVLHNTCEDSLLAAPI+LDLV+LAE+++RI +K + + +F +FHPV ++LSYL KAP+VP    VVNAL KQRA +ENI +ACVG+AP+NNM+LE +
Sbjct:  377 GEHPDHVIVIKYVPYVGDSKRAMDEYTSQIFMGGHNTIVLHNTCEDSLLAAPIILDLVILAEVTSRITMKKQDDDQFATFHPVLSLLSYLLKAPIVPKHATVVNALFKQRACIENIFKACVGIAPDNNMLLEQR 510          
BLAST of FC928836 vs. ExPASy Swiss-Prot
Match: INO1A_XENLA (Inositol-3-phosphate synthase 1-A OS=Xenopus laevis GN=isyna1-A PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.388e-51
Identity = 97/136 (71.32%), Postives = 114/136 (83.82%), Query Frame = 3
Query:    3 GPGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 410
            GP E PDH VVIKYVPYVGDSKRAMDEYTSEI MGG NTIVLHNTCEDSLLA+PI+LDLVLL EL  RI  + E + +F +FH V +ILS+L KAPLVP GTPV+NA  +QR  +ENILRAC+GL+P+N+M+LE+K
Sbjct:  369 GPNEKPDHCVVIKYVPYVGDSKRAMDEYTSEIMMGGANTIVLHNTCEDSLLASPIILDLVLLTELCQRITFRTETDQEFQTFHSVLSILSFLCKAPLVPAGTPVINAFFRQRNCIENILRACLGLSPQNHMMLEHK 504          
BLAST of FC928836 vs. ExPASy Swiss-Prot
Match: INO1B_XENLA (Inositol-3-phosphate synthase 1-B OS=Xenopus laevis GN=isyna1-B PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.321e-51
Identity = 98/136 (72.06%), Postives = 113/136 (83.09%), Query Frame = 3
Query:    3 GPGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 410
            GP E PDH VVIKYVPYVGDSKRAMDEYTSEI MGG NTIVLHNTCEDSLLA+PI LDLVLL EL  RI  + E + +F +FH V +ILS+L KAPLVP GTPVVNA  +QR  +ENILRAC+GL+P+N+M+LE+K
Sbjct:  369 GPNEKPDHCVVIKYVPYVGDSKRAMDEYTSEIMMGGANTIVLHNTCEDSLLASPIFLDLVLLTELCQRITFRTETDQEFQTFHSVLSILSFLCKAPLVPAGTPVVNAFFRQRNCIENILRACLGLSPQNHMMLEHK 504          
BLAST of FC928836 vs. ExPASy Swiss-Prot
Match: INO1_RAT (Inositol-3-phosphate synthase 1 OS=Rattus norvegicus GN=Isyna1 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.641e-50
Identity = 93/135 (68.89%), Postives = 113/135 (83.70%), Query Frame = 3
Query:    6 PGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 410
            PGE PDH VVIKYVPYVGDSKRA+DEYTSE+ +GG NT+VLHNTCEDSLLAAPI+LDLVLL EL  R+    + + +   FHPV ++LS+L KAPLVPPG+PVVNAL +QR+ +ENI RACVGL P+N+M+LE+K
Sbjct:  373 PGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDSLLAAPIMLDLVLLTELCQRVSFCTDSDPEPQGFHPVLSVLSFLFKAPLVPPGSPVVNALFRQRSCIENIFRACVGLPPQNHMLLEHK 507          
BLAST of FC928836 vs. ExPASy Swiss-Prot
Match: INO1_MACFA (Inositol-3-phosphate synthase 1 OS=Macaca fascicularis GN=ISYNA1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.883e-50
Identity = 92/135 (68.15%), Postives = 114/135 (84.44%), Query Frame = 3
Query:    6 PGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 410
            PGE PDH VVIKYVPYVGDSKRA+DEYTSE+ +GG NT+VLHNTCEDSLLAAPI+LDL LL EL  R+    + + +  +FHPV ++LS+L KAPLVPPG+PVVNAL +QR+ +ENILRAC+GL P+N+M+LE+K
Sbjct:  373 PGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDSLLAAPIMLDLALLTELCQRVSFCTDADPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALFRQRSCIENILRACLGLPPQNHMLLEHK 507          
The following BLAST results are available for this feature:
BLAST of FC928836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
INO1_ORYSJ2.540e-6996.27Inositol-3-phosphate synthase OS=Oryza sativa subs... [more]
INO1_HORVU5.659e-6994.81Inositol-3-phosphate synthase OS=Hordeum vulgare P... [more]
INO1_BRANA1.646e-6894.07Inositol-3-phosphate synthase OS=Brassica napus PE... [more]
INO3_ARATH1.394e-6791.85Probable inositol-3-phosphate synthase isozyme 3 O... [more]
INO1_CITPA7.408e-6195.20Inositol-3-phosphate synthase OS=Citrus paradisi P... [more]
INO1_DICDI5.685e-5372.39Inositol-3-phosphate synthase OS=Dictyostelium dis... [more]
INO1A_XENLA2.388e-5171.32Inositol-3-phosphate synthase 1-A OS=Xenopus laevi... [more]
INO1B_XENLA5.321e-5172.06Inositol-3-phosphate synthase 1-B OS=Xenopus laevi... [more]
INO1_RAT2.641e-5068.89Inositol-3-phosphate synthase 1 OS=Rattus norvegic... [more]
INO1_MACFA5.883e-5068.15Inositol-3-phosphate synthase 1 OS=Macaca fascicul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3AH01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928836 ID=FC928836; Name=FC928836; organism=Citrus clementina; type=EST; length=738bp
ATGGGCCTGGTGAACACCCCGACCACGTTGTGGTCATCAAGTATGTGCCA
TATGTTGGCGATAGCAAGAGAGCCATGGATGAGTACACATCAGAAATTTT
CATGGGTGGCAAGAACACCATTGTGCTGCACAACACGTGTGAGGACTCTC
TTTTGGCTGCTCCAATCGTTCTAGATTTGGTTCTGCTGGCTGAACTCAGC
ACCAGGATCCAGCTCAAAGCTGAAGGAGAGGGCAAATTCCACTCTTTCCA
CCCTGTGGCTACAATTCTCAGCTACCTCACCAAGGCTCCTCTGGTCCCTC
CAGGCACACCAGTGGTGAATGCGCTGTCGAAGCAGCGTGCAATGCTTGAG
AACATTCTGAGGGCTTGCGTTGGCTTGGCTCCTGAGAACAACATGATTTT
GGAATACAAGTGAAGAACTTGCAGGGGAGAAAAGTGGAAGAACCGGTTTT
CCCTTTCTCTGTCACCAATCAAAGCTGTGGTGGTCCATTTAATTACTGAT
TGTAATGTCTTGTGTCATGAAATTGTGGTTAATATTAGTGTGTCCTGTAT
GTTTGCTCTTTTATTTTTTTAATGAAGGTGCTGGAGTGTAGCCCATTGCC
TTTGTAGCTCATTTCGGAGCATGAAATCTCTTGTATTGCAAGTAGATAAT
ATATGGAAGTTCATAAATAACTGTATTGCGGCAAATTTGAATCTCATCTA
AATCCTTACTTCTTAAAAAAAAAAAAAAAAAAAAAAAA
back to top