FC928837

Overview
NameFC928837
Unique NameFC928837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length780
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9256 contig Ccv1_Contig9256:11..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928837 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTD+ES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK +
Sbjct:   86 VVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEF 139          
BLAST of FC928837 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTDQES+ NVKQWL EIDR+AS+NVNKLLVGNK DLT  KVV   TAK +
Sbjct:   86 VVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEF 139          
BLAST of FC928837 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTD +SFNNVKQWL EIDRYA++ VNKLLVGNK D+T  KVV Y  AK +
Sbjct:   86 VVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEF 139          
BLAST of FC928837 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.971e-15
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            IVYDVTDQ+SFNNVKQWL EIDRYA + VN+LLVGNK D+   KVV Y  AK +
Sbjct:   86 IVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEF 139          
BLAST of FC928837 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            IVYDVTDQESFN VK WL EIDRYA+  V KLLVGNKCDL   +VV Y+ AK +
Sbjct:   86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF 139          
BLAST of FC928837 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.509e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTD+ +F NV+QWL EIDR+A +NVNKLLVGNK DL A KVV + TAK +
Sbjct:   86 VVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAF 139          
BLAST of FC928837 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.734e-14
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            +VYDVTD  SFNNVKQW+ EI RYA D+V +LLVGNKCDL   K+V   TA+ Y
Sbjct:   86 VVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREY 139          
BLAST of FC928837 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.488e-14
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPS 225
            +VYD TDQ+SF NVKQW+ EIDRYA +NVNKLLVGNK DL   KVV    AK +   Y GI F   S
Sbjct:   88 LVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESY-GIPFIETS 153          
BLAST of FC928837 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.846e-13
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK 180
            IVYD T+ ESFNNVKQWL+EIDRYA+++V KLL+GNK D+  +KVVS ET +
Sbjct:   86 IVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGR 137          
BLAST of FC928837 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11
Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY 186
            IVYD+T  +SFN++K+WL ++DR+AS +V KL+VGNKCDL + + V ++ AK +
Sbjct:  111 IVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKF 164          
The following BLAST results are available for this feature:
BLAST of FC928837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RAB1B_MACFA8.000e-1674.07Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1C_HUMAN1.045e-1574.07Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
YPT1_NEUCR1.365e-1570.37GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
YPT1_SCHPO3.971e-1570.37GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
YPT1_YEAST8.846e-1570.37GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1A_DICDI1.509e-1466.67Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1B_DICDI5.734e-1464.81Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB1D_DICDI7.488e-1461.19Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RABD1_ARATH2.846e-1367.31Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1C_DICDI2.663e-1151.85Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AH03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928837 ID=FC928837; Name=FC928837; organism=Citrus clementina; type=EST; length=780bp
GGCACGAGGTGTCTCCTCTGGTAGATTGTTTATGATGTGACAGACCAAGA
GAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTTATGCTA
GTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTCACTGCA
AATAAGGTTGTCTCGTACGAAACAGCCAAGGTATATCTACTTCTCTACAC
TGGCATTTTCTTTTTTTACCCCTCCCCTTAACAAGGTTCAAGCCACTTCC
TCCCCCCTCCAAATTATGTGTCAAAGTAAATTTTGTATAATGATCCGAAA
TTGCTATTTCCACCATTCTTAATGGTGAACCTTTATGTCGATTCGTATTG
CATTCATCAAGATAGTCTTTAGTTGCTGGCCAGTAAAGGCACTAGAGTTT
GAGTTGGATAAAAAGCCTTCCTTCAAAGATTATAACTCGAAGACTCCTTA
CCTTAGGAGCTGGATAAGTGATACATCTGGCGAGCATTCTGTTGACCCCT
TGTACTCTTCTTCTTTATTAGGCATTTGCAGATGAAATTGGAATACCTTT
CATGGAAACTAGTGCAAAAGATTCTACCAACGTGGAACAGGCATTCATGG
CCATGGCTGCTTCAATCAAGGATAGGTATTGATGCATATTTGCTTTCTAT
ATTAAACGCGAAATAGATTGATAGGAGTATTGTGTTTTGCCTTCTTTTTG
AAGAAGTCTTCAGATTACGTAACGCCATAACTTCATACAGTTACTTATAT
TACCTGCTATATTTGTTTTCTATATTAAAC
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