FC928840

Overview
NameFC928840
Unique NameFC928840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9258 contig Ccv1_Contig9258:11..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR81_ARATH (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 40/158 (25.32%), Postives = 74/158 (46.84%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483
            + G + D + Y   +  L      + AL L   +R +  E  +  ++ LIDGL ++G+L+          +     DVV Y +MI    + G+++KA ++F +M  KG  P+   +N+++ G     +  +   LL  M+ R   P+    S +V+ L
Sbjct:  285 KDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNL 442          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP391_ARATH (Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 38/143 (26.57%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   67 KNGYIVEALELFRTL-RILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            KNG++ +A+ELF  + + L C+  +  Y+ L+  LC       A+ L   + R  L  D  TY I+++  C+ GKM +A +   +M  +G  P     + L+ G +         E++ +M +   +PD  T +I+++ + K+
Sbjct:  158 KNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKS 300          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP342_ARATH (Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 44/169 (26.04%), Postives = 79/169 (46.75%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSI 513
            +RHGV  D  +Y T I    KN          + ++     + + +Y+ L+D   K  +++    +   + +     D  TYNIMI+     G +D+  D+  +++  G+ PD  ++NTL+          + V L+  M  RN+IPD  T + +V  L +N+  L +I
Sbjct:  726 KRHGVV-DVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKVTYTNLVTALRRNDEFLEAI 893          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP196_ARATH (Pentatricopeptide repeat-containing protein At2g40240, mitochondrial OS=Arabidopsis thaliana GN=At2g40240 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 42/151 (27.81%), Postives = 76/151 (50.33%), Query Frame = 1
Query:   37 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            AY   I  LCK G I +AL +   +   +  L   +Y  ++  L +  +++ AW +  S+    +  DV  YN  + + C DG+++ A ++   +E  G +PD  +++ L+LG  R  +    + +L RM+E  V    ST + V+  LV+
Sbjct:  109 AYDILISRLCKLGRIDDALIVIGDMSNGRLGLTPSTYHPILCSLTRKYKIEEAWRVVESMRSKSVSMDVTAYNYFLTSHCYDGELESASEVMRKIEEDGNSPDSRSYDALVLGACRAGKVEAAMAILRRMEEDGVTVLYSTHAHVITGLVE 259          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP413_ARATH (Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 45/158 (28.48%), Postives = 74/158 (46.84%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            G++A T    + I  L  +G  +EA  LF  LR    +    +Y+ L+ G  K+G LK A  +   + +  +  D  TY+++I A    G+ + A  +  +MEA  V P+   F+ L+ G     E  K  ++L  M    V PD    ++V+D   K
Sbjct:  299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 456          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP318_ARATH (Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 40/151 (26.49%), Postives = 77/151 (50.99%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            Y   +D LCK GYI  ALELF+ ++  + + ++ +Y+ LI+GLCKS R+  A  +   L +     + VTY  ++       ++ +   LFL+M+ +G   D  A+  ++   I+   T +  E +  +  +    D  + + +++L  K+
Sbjct:  157 YNVLLDALCKCGYIDNALELFKEMQS-RFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKD 306          
The following BLAST results are available for this feature:
BLAST of FC928840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
PPR81_ARATH5.671e-1125.32Pentatricopeptide repeat-containing protein At1g55... [more]
PP391_ARATH5.671e-1126.57Pentatricopeptide repeat-containing protein At5g18... [more]
PP342_ARATH5.671e-1126.04Pentatricopeptide repeat-containing protein At4g30... [more]
PP196_ARATH5.671e-1127.81Pentatricopeptide repeat-containing protein At2g40... [more]
PP413_ARATH9.673e-1128.48Pentatricopeptide repeat-containing protein At5g42... [more]
PP318_ARATH9.673e-1126.49Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AH06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928840 ID=FC928840; Name=FC928840; organism=Citrus clementina; type=EST; length=758bp
GGCACGAGGCGTCATGGCGTGGCAGCTGATACCTGGGCATATAGAACCTT
TATTGATGGGCTCTGCAAGAATGGTTATATTGTAGAGGCACTTGAACTAT
TTCGTACTTTGAGAATTCTCAAGTGTGAACTTGATATTCCATCCTACAGC
TGCCTCATTGATGGATTATGTAAATCCGGCAGACTCAAAATTGCATGGGA
ACTATTTCATAGTTTGCCTCGTGGAGTCCTAATAGCAGATGTTGTAACAT
ATAACATCATGATCCATGCGCTTTGTGCTGATGGAAAAATGGACAAGGCA
CATGATTTGTTTCTTGATATGGAAGCAAAAGGTGTAGCACCCGATTGTGT
CGCATTTAACACGCTGATGCTAGGTTGCATCCGCAATAATGAGACATCAA
AAGTTGTTGAACTCCTTCACAGAATGGATGAGAGAAATGTGATACCAGAT
GCATCTACACTTTCAATTGTTGTGGACTTACTTGTAAAGAATGAAATTAG
CTTAAACTCCATTCCACAATTCAAGAGTCAAAGGTAAGTGAGTTTAATAT
TGATTTAGTCACATGTTTCTTCTGCCTGAAAACCCGATCTGGAGGATCCC
ATTCTTATTAACACGTGTAAAGGAGTGTTGTCTAATGTTGGCATGTTCCT
AGGTTCTGTCCATGGATTCTGTTTGCAGACATGGCTAACTTCTTGTCCAA
CAGATAAGTTTTAAAGTCTTTCAACTTTATGTTGTAAAATAACATTTTCA
TTATTCAA
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