FC928840

Overview
NameFC928840
Unique NameFC928840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9258 contig Ccv1_Contig9258:11..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR18_ARATH (Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 51/165 (30.91%), Postives = 79/165 (47.88%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN---EISLNSIPQFK 525
            Y   IDGLCK G + EA E+   +        + +YS LID   K  R  +A ++   +       +VV Y  MI  LC  GK D+A+ L   ME KG  P+ V +  ++ G     +    +ELL RM  + V P+  T  +++D   KN   +++ N + + K
Sbjct:  677 YDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMK 841          

HSP 2 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 43/154 (27.92%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            GV  +     +F   LC  G   +A  + R +       D  +YS +++ LC + ++++A+ LF  + RG L+ADV TY IM+ + C  G +++A   F +M   G  P+ V +  L+   ++  + S   EL   M     +P+  T S ++D
Sbjct:  443 GVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596          

HSP 3 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 45/177 (25.42%), Postives = 83/177 (46.89%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLF-----------LDMEAK-----GVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            +R G+ AD + Y   +D  CK G I +A + F  +R + C  ++ +Y+ LI    K+ ++  A ELF ++     + ++VTY+ +I   C  G+++KA  +F           +DM  K        P+ V +  L+ G  +++   +  +LL  M      P+      ++D L K
Sbjct:  510 KRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686          

HSP 4 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 39/145 (26.90%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPD 450
            G   DT  Y   ++ LC    +  A  LF  ++      D+ +Y+ ++D  CK+G ++ A + F+ +       +VVTY  +IHA     K+  A++LF  M ++G  P+ V ++ L+ G  +  +  K  ++  RM     +PD
Sbjct:  478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR67_ARATH (Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana GN=At1g31840 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474
            G++ +   Y   I GLC++G I EA  ++  +     E  I +YS LIDG CK G L+  + L+  + +     DVV Y +++  L   G M  A    + M  + +  + V FN+L+ G  R N   + +++   M    + PD +T + V+
Sbjct:  386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVM 538          

HSP 2 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 52/201 (25.87%), Postives = 89/201 (44.28%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELF-HSLPRGVLI----------------------------------ADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSI 513
            G A +   + T I+G CK G +  A +LF+ +     E D+ +YS LIDG  K+G L +  +LF  +L +GV +                                   +VVTY I+I  LC DG++ +A  ++  +  +G+ P  V +++L+ G  +         L   M +    PD     ++VD L K  + L+++
Sbjct:  281 GPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAM 481          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 44/159 (27.67%), Postives = 76/159 (47.80%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSG-RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            G+  D   +   + G    G + +A +L   +R    E ++  Y+ LI  LC++  R+  A  +F  + R    AD+VTY  +I   C  G +DK + +  DM  KGV P  V +  +M+   +  +  + +EL+ +M  R   PD    ++V+ L  K
Sbjct:  266 GLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACK 424          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP199_ARATH (Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNV 441
            R+  V AD+  +   I G C+     EA+   + +  L   L    YS ++    K G++  A  +F+ +       DV+ Y  M+HA  A  K  KA +LFL+MEA G+ PD +A + LM    +  + S V  L+  M E+ +
Sbjct:  522 RKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEI 666          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 44/160 (27.50%), Postives = 78/160 (48.75%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            G+    + Y + I  LC+     EA ELF  +     + D+   + L+DG C  G +  A+ L   +    +  D VTYN ++  LC +GK ++A +L  +M+ +G+ PD +++NTL+ G  +  +T     +   M      P   T + ++  L KN+
Sbjct:  427 GIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQ 586          

HSP 2 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 48/155 (30.97%), Postives = 71/155 (45.81%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474
            + G+    + Y T I GL     I  A  L R +R     LD  +Y+ LI+G C+ G  K A+ L   +    +     TY  +I+ LC   K  +A +LF  +  KG+ PD V  NTLM G        +   LL  MD  ++ PD  T + ++
Sbjct:  355 KQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLM 509          

HSP 3 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 42/156 (26.92%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483
            G+  D     T +DG C  G +  A  L + + ++    D  +Y+CL+ GLC  G+ + A EL   + R  +  D ++YN +I      G    A  +  +M + G  P  + +N L+ G  +N E     ELL  M    ++P+ S+   V++ +
Sbjct:  462 GMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAM 617          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR22_ARATH (Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 41/149 (27.52%), Postives = 75/149 (50.34%), Query Frame = 1
Query:   13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAST 459
            HG+  +T  Y T +  LC + Y  E  E+   +        + +Y+ LI+GLCK+  L  A + F+ +     + D+VTYN ++ A+  +G +D A +L   ++     P  + +N+++ G  +     K +EL H+M +  + PD  T
Sbjct:  308 HGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDIT 456          

HSP 2 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 37/151 (24.50%), Postives = 77/151 (50.99%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLK-IAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            Y   ++ +C+      A+E+   + +  C  DI +Y+ L++  C+ G L+ +A  + H L  G+ + + VTYN ++H+LC+    D+  ++   M      P  + +N L+ G  +    S+ ++  ++M E+  +PD  T + V+  + K
Sbjct:  247 YTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLEL-NTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSK 396          

HSP 3 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 44/152 (28.95%), Postives = 70/152 (46.05%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            Y   I+GLCK   +  A++ F  +   KC  DI +Y+ ++  + K G +  A EL   L        ++TYN +I  L   G M KA +L+  M   G+ PD +   +L+ G  R N   +  ++L     R      ST  +V+  L K +
Sbjct:  352 YNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKK 503          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 42/150 (28.00%), Postives = 75/150 (50.00%), Query Frame = 1
Query:   46 TFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            T I GLCK+G   +ALEL+         +D  + + L+ GLC++G+L  A+ +   +     + D V+YN +I   C   K+D+A     +M  +G+ PD   ++ L+ G    N+  + ++         ++PD  T S+++D   K E
Sbjct:  488 TLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 637          

HSP 2 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 43/156 (27.56%), Postives = 76/156 (48.72%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474
            +R+G+  D + Y   IDG CK     E  E F  +     + +   Y+ LI   C+SGRL +A EL   +    +  +  TY  +I  +    ++++A  LF +M  +G+ P+   +  L+ G  +  +  KV  LL  M  +NV P+  T ++++
Sbjct:  615 KRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMI 770          

HSP 3 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 40/153 (26.14%), Postives = 73/153 (47.71%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474
            G   D  +Y T I G C    + EA      +     + D  +YS LI GL    +++ A + +    R  ++ DV TY++MI   C   + ++  + F +M +K V P+ V +N L+    R+   S  +EL   M  + + P+++T + ++
Sbjct:  548 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700          

HSP 4 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 40/145 (27.59%), Postives = 68/145 (46.90%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPD 450
            G   DT      + GLC+ G + EA  + + +    C +D  SY+ LI G C   +L  A+     + +  L  D  TY+I+I  L    K+++A   + D +  G+ PD   ++ ++ GC +   T +  E    M  +NV P+
Sbjct:  513 GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPN 657          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP236_ARATH (Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 56/210 (26.67%), Postives = 93/210 (44.29%), Query Frame = 1
Query:   19 VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSIPQFKSQRXXXXXXXXXXXXXA*KPDLEDPILINTCKGVLSNVGMF 648
            V+   + Y   IDG CK   + +AL L   +          +Y  LI+ L K+ R + A ELF  L           Y +MI      GK+ +A DLF +M+ +G  PD  A+N LM G ++    ++   LL +M+E     D ++ +I+++   +  +   +I  F++ +               KP   D +  NT  G  ++ GMF
Sbjct:  405 VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGI-----------KP---DGVTYNTLLGCFAHAGMF 600          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR41_ARATH (Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana GN=At1g13630 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 43/145 (29.66%), Postives = 75/145 (51.72%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474
            Y T +DGLC+   + +A+   RT         + S++ ++ G CK G + +A   F ++ +  L+  V ++NI+I+ LC  G + +A +L  DM   GV PD V +N L  G       S   E++  M ++ + PD  T +I++
Sbjct:  204 YSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILL 348          

HSP 2 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 51/171 (29.82%), Postives = 80/171 (46.78%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELD-IPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSIPQFK 525
            G++ D   Y   + G C+ G I   L L + +     EL+ I   S ++ GLCK+GR+  A  LF+ +    L  D+V Y+I+IH LC  GK D A  L+ +M  K + P+      L+LG  +     +   LL  +       D    +IV+D   K+     ++  FK
Sbjct:  336 GLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFK 506          

HSP 3 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 46/184 (25.00%), Postives = 80/184 (43.48%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTY------------------------------------NIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAST 459
            G+    +++   I+GLC  G I EALEL   +     E D  +Y+ L  G    G +  AWE+   +    L  DV+TY                                    ++M+  LC  G++D+A  LF  M+A G++PD VA++ ++ G  +  +    + L   M ++ ++P++ T
Sbjct:  266 GLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRT 449          

HSP 4 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 42/138 (30.43%), Postives = 67/138 (48.55%), Query Frame = 1
Query:   58 GLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIV 471
            GLC+ G ++EA  L  +L      LDI  Y+ +IDG  KSG ++ A ELF  +    +   V T+N +I+  C    + +A  +   ++  G+AP  V++ TLM        T  + EL   M    + P   T S++
Sbjct:  456 GLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVI 593          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP139_ARATH (Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVI 444
            +  GV  DT  Y + I  +  +G +  A+ L+  +R   CE  + SY+  +  L   GR++ A E++  + R  +  +  TY +++  L A GK ++A D+F  M+  GV PD  A N L+   ++  ETS +  +L  M E  V+
Sbjct:  149 KEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPDKAACNILIAKALKFGETSFMTRVLVYMKENGVV 294          
The following BLAST results are available for this feature:
BLAST of FC928840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
PPR18_ARATH2.720e-1330.91Pentatricopeptide repeat-containing protein At1g06... [more]
PPR67_ARATH3.552e-1328.76Putative pentatricopeptide repeat-containing prote... [more]
PP275_ARATH3.552e-1327.67Pentatricopeptide repeat-containing protein At3g49... [more]
PP199_ARATH3.552e-1330.34Pentatricopeptide repeat-containing protein At2g41... [more]
PP152_ARATH3.552e-1327.50Pentatricopeptide repeat-containing protein At2g15... [more]
PPR22_ARATH4.639e-1327.52Pentatricopeptide repeat-containing protein At1g08... [more]
PP325_ARATH4.639e-1328.00Pentatricopeptide repeat-containing protein At4g19... [more]
PP236_ARATH6.059e-1326.67Pentatricopeptide repeat-containing protein At3g16... [more]
PPR41_ARATH7.913e-1329.66Putative pentatricopeptide repeat-containing prote... [more]
PP139_ARATH7.913e-1330.14Pentatricopeptide repeat-containing protein At2g01... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AH06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928840 ID=FC928840; Name=FC928840; organism=Citrus clementina; type=EST; length=758bp
GGCACGAGGCGTCATGGCGTGGCAGCTGATACCTGGGCATATAGAACCTT
TATTGATGGGCTCTGCAAGAATGGTTATATTGTAGAGGCACTTGAACTAT
TTCGTACTTTGAGAATTCTCAAGTGTGAACTTGATATTCCATCCTACAGC
TGCCTCATTGATGGATTATGTAAATCCGGCAGACTCAAAATTGCATGGGA
ACTATTTCATAGTTTGCCTCGTGGAGTCCTAATAGCAGATGTTGTAACAT
ATAACATCATGATCCATGCGCTTTGTGCTGATGGAAAAATGGACAAGGCA
CATGATTTGTTTCTTGATATGGAAGCAAAAGGTGTAGCACCCGATTGTGT
CGCATTTAACACGCTGATGCTAGGTTGCATCCGCAATAATGAGACATCAA
AAGTTGTTGAACTCCTTCACAGAATGGATGAGAGAAATGTGATACCAGAT
GCATCTACACTTTCAATTGTTGTGGACTTACTTGTAAAGAATGAAATTAG
CTTAAACTCCATTCCACAATTCAAGAGTCAAAGGTAAGTGAGTTTAATAT
TGATTTAGTCACATGTTTCTTCTGCCTGAAAACCCGATCTGGAGGATCCC
ATTCTTATTAACACGTGTAAAGGAGTGTTGTCTAATGTTGGCATGTTCCT
AGGTTCTGTCCATGGATTCTGTTTGCAGACATGGCTAACTTCTTGTCCAA
CAGATAAGTTTTAAAGTCTTTCAACTTTATGTTGTAAAATAACATTTTCA
TTATTCAA
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