FC928853

Overview
NameFC928853
Unique NameFC928853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5224 contig Ccv1_Contig5224:581..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928853 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG G +  V +RIGF+  +C   G+  GD+LDCYNQRPY
Sbjct:  219 ASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of FC928853 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.056e-33
Identity = 62/100 (62.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 301
            ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG G N AV +RIG++  +CG   + PG++LDCYNQR +G
Sbjct:  152 ATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of FC928853 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.213e-33
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + PGD+LDCY+QR +
Sbjct:  146 ATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of FC928853 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.808e-33
Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG G NAAV +RIG++  +CG   + PGD+LDCYNQR +
Sbjct:  152 ATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of FC928853 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.808e-33
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG G ++ V +RIGF+  +C   G+  GD+LDCYNQRP+
Sbjct:  167 ATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of FC928853 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.808e-33
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG G ++ V +RIGF+  +C   G+  G +LDCYNQRP+
Sbjct:  223 ASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of FC928853 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.891e-33
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 301
            A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC  G NA + NRIGF+  +C   G+ PG++LDC NQRP+G
Sbjct:  147 ANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of FC928853 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.517e-32
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G++LDC NQ+ +
Sbjct:  152 ATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of FC928853 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.981e-32
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG G +  V NRIGF+  +CG FGI  G +LDCYNQRP+
Sbjct:  231 ATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of FC928853 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 137.887 bits (346), Expect = 2.587e-32
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG G ++ V +RIGF+  +C   G+  G++LDCY+QRP+
Sbjct:  219 ATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
The following BLAST results are available for this feature:
BLAST of FC928853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHI3_ORYSJ6.157e-3461.62Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC3.056e-3362.00Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIB_SOLLC5.213e-3361.62Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC6.808e-3362.63Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIC_SECCE6.808e-3360.61Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI1_ORYSJ6.808e-3357.58Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC8.891e-3359.00Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIA_SOLCI1.517e-3258.59Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI2_ORYSJ1.981e-3260.61Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_HORVU2.587e-3258.5926 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CA07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928853 ID=FC928853; Name=FC928853; organism=Citrus clementina; type=EST; length=509bp
TGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGA
CTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGG
AAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCT
AACCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATG
CCGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTT
GGGATTCAGCCTGGTGACAGTCTTGATTGCTACAACCAACGACCTTATGG
CCTTAATCTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGT
AAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTT
GTAGGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATTGTAAGTAAA
TTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCACCAAAAAAAAA
AAAAAAAAA
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