FC928857

Overview
NameFC928857
Unique NameFC928857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS4 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glgA PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPA 308
            D +L+PSRFEPCGL Q++ +RYG +P+VA TGGL DT+        M +         P +  A +  +RR +  Y   A  E + +N M   + W+  A
Sbjct:  368 DAVLVPSRFEPCGLTQMYGLRYGAIPVVALTGGLADTIINA-NPAAMAAGCATGLTFHPTEPPAFAEALRRLIHLYADPAAWETVQRNAMRHPVGWETSA 466          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_PROM5 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 52/142 (36.62%), Postives = 70/142 (49.30%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            +D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV          TGF    F       +P+D    +  VR   A     +   +    M+Q+ SW+  A ++E  L+  +V G  EP  D  EI   +    A P
Sbjct:  348 SDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTVLPHDPENNCGTGFCFDRF-------EPIDF--YTALVRSWEAFRHKDSWKLLQIRAMSQEFSWQRSALEYE--LMYKDVCGIKEPSPDITEIEKFSYGQSADP 478          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_PELCD (Glycogen synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            +D  L+PS +EPCGL QL A+RYG+VP+V  TGGL DTV +     Q  +   +      +  +A+   + RALA Y   +   ++++ GM  D SW+  A ++ E
Sbjct:  372 SDMFLMPSHYEPCGLGQLIALRYGSVPVVRKTGGLADTVFDP----QDQATQANGFTFREISPSAMLAALDRALALYRQPEGWKQLVRRGMQGDFSWRQSALRYVE 473          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_THEAB (Glycogen synthase OS=Thermosipho africanus (strain TCF52B) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 317
            +D  L+PSR+EPCGL Q++++RYGT+P+V  TGGL DTV    EE   G   G            D A +   V RA+  +  +     ++++N M  DLSW+  A ++
Sbjct:  373 SDMFLMPSRYEPCGLGQMYSLRYGTIPVVRYTGGLADTVMEYDEEAMKGNGFG--------FKEYDSAYLLKAVARAVDFFKNKKGHWKKLIENAMKTDLSWERSANEY 473          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_NOSP7 (Glycogen synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKW 317
            D  L+PSRFEPCG+ Q+ ++RYG+VPIV  TGGLVDTV         G+     +  +P+D   + T + RA   +  +    E+ K GM++D SW   AK++
Sbjct:  349 DAFLMPSRFEPCGISQMMSLRYGSVPIVRRTGGLVDTVSHHDPENAAGT-GYCFDRYEPLD---LFTCMIRAWEGFRFKPQWQELQKRGMSEDFSWYKSAKEY 447          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_ERWT9 (Glycogen synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 323
            AD IL+PSRFEPCGL QL+A++YGT+P+V  TGGL DTV     E    G   G    D  A       ++   +RR+   +   +L   + +  M  D SW+  A  + +
Sbjct:  367 ADVILVPSRFEPCGLTQLYALKYGTLPLVRRTGGLADTVNDCSLENLADGIASGFSFEDSNA------WSLLRAIRRSFVLWSRPSLWRYVQRQAMGMDFSWQVAAVAYRD 471          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_BACC1 (Glycogen synthase OS=Bacillus cereus (strain ATCC 10987) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNL 338
            +D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TVRRA+  Y  + + E ++K  M +D SW   A  +++   +L
Sbjct:  368 SDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVRRAIEFYHDKPVWEQLVKQAMTEDYSWGKSALAYKKLYKSL 474          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA1_BRAJA (Glycogen synthase 1 OS=Bradyrhizobium japonicum GN=glgA1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSW 296
            +DF L+PSRFEPCGL Q++A R+G++PI   TGGL +T+ +G TGF     S +          +    VRRA   +  Q  L  M ++ M +  SW
Sbjct:  359 SDFTLMPSRFEPCGLSQMYAQRFGSLPIGHQTGGLAETITDGETGFLFSRPSHE----------SFLGGVRRAFEAFMAQDQLDSMRRSAMGRSFSW 445          
The following BLAST results are available for this feature:
BLAST of FC928857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_RHOS46.575e-1136.00Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]
GLGA_PROM56.575e-1136.62Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_PELCD6.575e-1136.79Glycogen synthase OS=Pelobacter carbinolicus (stra... [more]
GLGA_THEAB8.587e-1136.70Glycogen synthase OS=Thermosipho africanus (strain... [more]
GLGA_NOSP78.587e-1139.81Glycogen synthase OS=Nostoc punctiforme (strain AT... [more]
GLGA_ERWT98.587e-1136.94Glycogen synthase OS=Erwinia tasmaniensis (strain ... [more]
GLGA_BACC18.587e-1139.82Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]
GLGA1_BRAJA8.587e-1139.18Glycogen synthase 1 OS=Bradyrhizobium japonicum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CA12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928857 ID=FC928857; Name=FC928857; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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