FC928857

Overview
NameFC928857
Unique NameFC928857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_PSEF5 (Glycogen synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSW 296
            +DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E G TGF            D   VA+    + RA   +   AL   M+   MA   +W
Sbjct:  379 SDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIENGVTGF----------LFDESTVASYQEALTRAFKVFAYPALLNAMRCRAMAAPFNW 465          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_METSB (Glycogen synthase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 338
            AD I+IPSRFEPCGL QL A+RYG +PIVA  GGL DT+ +              +   P      +T  R A      +   E+++NGM  D+SW+ PA  + +   +L
Sbjct:  370 ADAIVIPSRFEPCGLTQLCALRYGALPIVARVGGLADTIIDANEMALASGIGTGLQFSPPTADMLGATLERAARLWAEPEIWDELIENGMLTDVSWRRPAALYAKLFRDL 479          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_MARMS (Glycogen synthase OS=Marinomonas sp. (strain MWYL1) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 45/112 (40.18%), Postives = 59/112 (52.68%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW---EETLLN 335
            D +LIPSRFEPCGL QL+A++YGT+PIV  TGGL DTV E   G +   F             A+   + R++  +  T    E  KN M  D SW     +W    E+L+N
Sbjct:  372 DALLIPSRFEPCGLTQLYALKYGTLPIVRQTGGLADTVFE--DGERANGF-----VFKEASAKALQAAMERSIECFHDTNRWQEKQKNAMCYDYSWDAVTDQWISLYESLIN 476          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_AZOSE (Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-GFTGFQMGSFS--VDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 353
            AD  ++PSRFEPCGL Q+++ RYGT PIV +TGGLVD+V +    G   G  S  +  EA      AA+   V RAL  +  + A   +  NGMA+D SW G A ++    + +  A +
Sbjct:  379 ADAFVMPSRFEPCGLNQMYSQRYGTPPIVRATGGLVDSVGDFSVDGLHRGEASGFLFAEATP----AALVEAVDRALKVFADRVAWRTLCCNGMARDFSWGGSAGRYARLYVAMRAAAA 493          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS9 (Glycogen synthase OS=Synechococcus sp. (strain CC9902) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 51/137 (37.23%), Postives = 73/137 (53.28%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            +D  L+PSRFEPCG+ QL+AMRYG+VP+V + GGLVDTV         G+ F  D    +PVD    +  VR   A     +  ++ K GM +D SW   A +++  L+  +V G  EP  D   +   ++   A P
Sbjct:  348 SDAFLMPSRFEPCGISQLYAMRYGSVPVVRNVGGLVDTVPPHDPNADRGTGFCFD--RFEPVDF--YTALVRAWEAYRHRSSWQDLQKRGMTEDYSWDRSAVEYD--LMYKDVCGIKEPTPDAALLEQFSRGQDADP 478          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_SALAR (Glycogen synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADIILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPH (Glycogen synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA--EMMKNGMAQDLSWKGPAKKWEE 323
            D  L+PS FEPCGL QL ++RYGTVPIV  TGGLVDTV      E   TGF   +++             +  T+R A   Y  +     +++  GMA+D SWK  A+K+EE
Sbjct:  372 DAFLMPSLFEPCGLSQLMSLRYGTVPIVRETGGLVDTVEPYNQHESTGTGFTFKNYNAH----------EMLYTIRFAKEIYQDKKREWNKIIDRGMAKDFSWKTSARKYEE 473          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_THICR (Glycogen synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            AD  L+PSRFEPCGL QL+++ YGT PIV STGGL DTV     E   TG   G    D          A+ +T+  AL  +  +    ++ KNGM QD SW   AK++
Sbjct:  381 ADLFLMPSRFEPCGLNQLYSLAYGTPPIVHSTGGLSDTVVNATKENLATGQATGFVFYDPSR------HALKSTILHALHLFSKKGTWQKLQKNGMRQDFSWTRSAKQY 483          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_SALTY (Glycogen synthase OS=Salmonella typhimurium GN=glgA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of FC928857 vs. ExPASy Swiss-Prot
Match: GLGA_SALTI (Glycogen synthase OS=Salmonella typhi GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
The following BLAST results are available for this feature:
BLAST of FC928857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_PSEF54.118e-1339.18Glycogen synthase OS=Pseudomonas fluorescens (stra... [more]
GLGA_METSB4.118e-1338.18Glycogen synthase OS=Methylocella silvestris (stra... [more]
GLGA_MARMS4.118e-1340.18Glycogen synthase OS=Marinomonas sp. (strain MWYL1... [more]
GLGA_AZOSE4.118e-1340.34Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN... [more]
GLGA_SYNS95.379e-1337.23Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_SALAR5.379e-1337.61Glycogen synthase OS=Salmonella arizonae (strain A... [more]
GLGA_CLOPH5.379e-1341.96Glycogen synthase OS=Clostridium phytofermentans (... [more]
GLGA_THICR7.025e-1343.12Glycogen synthase OS=Thiomicrospira crunogena (str... [more]
GLGA_SALTY7.025e-1337.61Glycogen synthase OS=Salmonella typhimurium GN=glg... [more]
GLGA_SALTI7.025e-1337.61Glycogen synthase OS=Salmonella typhi GN=glgA PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1CA12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928857 ID=FC928857; Name=FC928857; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
back to top