FC928858

Overview
NameFC928858
Unique NameFC928858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9258 contig Ccv1_Contig9258:11..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.277e-12
Identity = 45/162 (27.78%), Postives = 77/162 (47.53%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN-VIPDASTLSIVVDLLVK 489
            R  G+  +  AY T + G C +G IV+A+ +F  +  + C  +IR+Y  LI+G  K G L  A  +++ +       +VV Y  M+ ALC   K  +A  L   M  +  AP    FN  + G           ++  +M++++   P+  T + ++D L K
Sbjct:  344 RGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAK 505          

HSP 2 Score: 69.3218 bits (168), Expect = 3.146e-11
Identity = 46/167 (27.54%), Postives = 82/167 (49.10%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKG---VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498
            ++H    +   Y   +DGL K   I EA  L R + +   E    +Y+ L+ G C +G   IA +L   +       D +T N++I A C  GK ++A  + LD+ + G     PD +++  ++ G  R+N     V LL RM    ++P  +T S++++  + ++I
Sbjct:  485 QQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQM-LDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCFILDDI 650          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP139_ARATH (Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.277e-12
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVI 444
            +  GV  DT  Y + I  +  +G +  A+ L+  +R   CE  + SY+  +  L   GR++ A E++  + R  +  +  TY +++  L A GK ++A D+F  M+  GV PD  A N L+   ++  ETS +  +L  M E  V+
Sbjct:  149 KEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPDKAACNILIAKALKFGETSFMTRVLVYMKENGVV 294          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP326_ARATH (Pentatricopeptide repeat-containing protein At4g19895 OS=Arabidopsis thaliana GN=At4g19895 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.668e-12
Identity = 42/160 (26.25%), Postives = 82/160 (51.25%), Query Frame = 1
Query:    1 GTRRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM-EAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            G  + G   D       +  LC+NG +  A+  FR +  L  + ++ +++ LIDGLCK G +K A+E+   + R     +V T+  +I  LC  G  +KA  LFL +  +    P+   + +++ G  + ++ ++   L  RM E+ + P+ +T + +++
Sbjct:  242 GMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 401          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP239_ARATH (Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.668e-12
Identity = 40/156 (25.64%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483
            G++ +   + TF+ G    G + +   +   L +   + D+ ++S +I+ LC++  +K A++ F  +    +  + +TYNI+I + C+ G  D++  LF  M+  G++PD  A+N  +    +  +  K  ELL  M    + PD  T S ++  L
Sbjct:  455 GISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKAL 610          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP291_ARATH (Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.179e-12
Identity = 47/168 (27.98%), Postives = 85/168 (50.60%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNE--TSKVVELLHRMDERNVIPDASTLSIVVDLLVKN-EISL 504
            + G   ++  Y   IDG CK     EAL LF  +  L  ++ ++  + LI G   +     A +LF  + +  L  D   YN ++ +L   G +  A  +  +ME KG+ PD V F+++ +G +++ E   + V E   +M ER+++P   T+ +++ L   N E++L
Sbjct:  238 KRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNL 405          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP225_ARATH (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.845e-12
Identity = 49/158 (31.01%), Postives = 79/158 (50.00%), Query Frame = 1
Query:   70 NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA-DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE---ISLNSIPQFKSQ 531
            +G    A +LF  +  L CE  ++S++ L+     S +L  A + F  LP  + I  D+VTYN MI ALC  G MD    +F ++E  G  PD ++FNTL+    R     +   +   M  +N+ P+  + +  V  L +N+    +LN I   K++
Sbjct:  135 SGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTE 292          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.716e-12
Identity = 43/160 (26.88%), Postives = 74/160 (46.25%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            R G + D++ Y   +  L K    + AL     ++ +  +  +  Y+ LIDGL ++G L+        + +     DVV Y +MI      G++DKA ++F +M  KG  P+   +N+++ G     E  +   LL  M+ R   P+    S +V  L K
Sbjct:  282 RDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRK 441          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.853e-12
Identity = 40/151 (26.49%), Postives = 75/151 (49.67%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRT-LRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            + T I GLCK+  + EAL++    L++      +  Y+ LI  LC+ G L  A++L      G +  D   Y+ +I +L   G+ ++   +  +M  KG  PD V +N L+ G    N++     +L  M E+ + PD  + ++++ +  +
Sbjct:  190 FGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFR 340          

HSP 2 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 42/155 (27.10%), Postives = 69/155 (44.52%), Query Frame = 1
Query:   13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            +GV      Y + I  LC+ G +  A +L       K ++D   YS LI  L K+GR      +   +       D VTYN++I+  C +   + A+ +  +M  KG+ PD +++N ++    R  +  +   L   M  R   PD  +  IV D
Sbjct:  217 YGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFD 371          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.853e-12
Identity = 51/184 (27.72%), Postives = 88/184 (47.83%), Query Frame = 1
Query:    4 TRRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER--NVIPDASTLS-------------IVVDLLVKNEISLNS 510
            +RR     D  A    ++G C  G + EA   ++ +   KC  D+ SY  +I+ L K G+L  A EL+ ++       DV   N +I ALC   ++ +A ++F ++  KG  P+ V +N+L+    +   T KV EL+  M+ +  +  P+  T S             IV++ + KN+  + S
Sbjct:  238 SRRREFGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTS 421          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP160_ARATH (Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.853e-12
Identity = 39/146 (26.71%), Postives = 70/146 (47.95%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDA 453
            G   D       ++ LC  G + EALE+   +     ++D+ + + L+ G C  G++++A   F  + R   + +V TYN++I   C  G +D A D F DM+   +  +   FNTL+ G      T   +++L  M + + +  A
Sbjct:  278 GFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIGGRTDDGLKILEMMQDSDTVHGA 423          
The following BLAST results are available for this feature:
BLAST of FC928858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
PP270_ARATH1.277e-1227.78Pentatricopeptide repeat-containing protein At3g48... [more]
PP139_ARATH1.277e-1230.14Pentatricopeptide repeat-containing protein At2g01... [more]
PP326_ARATH1.668e-1226.25Pentatricopeptide repeat-containing protein At4g19... [more]
PP239_ARATH1.668e-1225.64Putative pentatricopeptide repeat-containing prote... [more]
PP291_ARATH2.179e-1227.98Pentatricopeptide repeat-containing protein At3g61... [more]
PP225_ARATH2.845e-1231.01Pentatricopeptide repeat-containing protein At3g13... [more]
PP288_ARATH3.716e-1226.88Pentatricopeptide repeat-containing protein At3g60... [more]
PPR79_ARATH4.853e-1226.49Putative pentatricopeptide repeat-containing prote... [more]
PP233_ARATH4.853e-1227.72Putative pentatricopeptide repeat-containing prote... [more]
PP160_ARATH4.853e-1226.71Pentatricopeptide repeat-containing protein At2g17... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1CB01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928858 ID=FC928858; Name=FC928858; organism=Citrus clementina; type=EST; length=866bp
GGCACGAGGCGTCATGGCGTGGCAGCTGATACCTGGGCATATAGAACCTT
TATTGATGGGCTCTGCAAGAATGGTTATATTGTAGAGGCACTTGAACTAT
TTCGTACTTTGAGAATTCTCAAGTGTGAACTTGATATTCGATCCTACAGC
TGCCTCATTGATGGATTATGTAAATCCGGCAGACTCAAAATTGCATGGGA
ACTATTTCATAGTTTGCCTCGTGGAGTCCTAATAGCAGATGTTGTAACAT
ATAACATCATGATCCATGCGCTTTGTGCTGATGGAAAAATGGACAAGGCA
CATGATTTGTTTCTTGATATGGAAGCAAAAGGTGTAGCACCCGATTGTGT
CGCATTTAACACGCTGATGCTAGGTTGCATCCGCAATAATGAGACATCAA
AAGTTGTTGAACTCCTTCACAGAATGGATGAGAGAAATGTGATACCAGAT
GCATCTACACTTTCAATTGTTGTGGACTTACTTGTAAAGAATGAAATTAG
CTTAAACTCCATTCCACAATTCAAGAGTCAAAGGTAAGTGAGTTTAATAT
TGATTTAGTCGCATGTTTCTTCTGCCTGAAAACCCGATCTGGAGGATCCC
ATTCTTATTAACACGTGTAAAGGAGTGTTGTCTAATGTTGGCATGTTCCT
AGGTTCTGTCCATGGATTCTGTTTGCAGACATGGCTAACTTCTTGTCCAA
CAGATAAGTTTTAAAGTCTTTCAACTTTATGTTGTAAAATAACATTTTCA
TTATTCAATTCATGAGTTTTCCTTCTGTATCACATACTTCTCATTAGCTG
GAAGCGCAAATTTTTTAGGCTTTTCCTGTATGGCCTCTTTTTCTGCTCTA
AATAAAATGGCATTTT
back to top