FC928858

Overview
NameFC928858
Unique NameFC928858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9258 contig Ccv1_Contig9258:11..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.412e-11
Identity = 42/153 (27.45%), Postives = 72/153 (47.06%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLS 465
            +  GV  D   Y T I GL K G + EA    +T+     E D  +Y+ L++G+C+ G    A  L   +       +  TYN ++H LC    MDK  +L+  M++ GV  +   + TL+   +++ + ++  E+     +   + DAS  S
Sbjct:  292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYS 444          

HSP 2 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            G   D + Y T + G C      EA+ +++ ++    E D  +Y+ LI GL K+GR++ A     ++       D  TY  +++ +C  G+   A  L  +MEA+G AP+   +NTL+ G  +     K +EL   M    V  +++  + +V  LVK+
Sbjct:  260 GFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKS 418          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP413_ARATH (Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 46/158 (29.11%), Postives = 75/158 (47.47%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            G++A T    + I  L  +G  +EA  LF  LR    +   R+Y+ L+ G  K+G LK A  +   + +  +  D  TY+++I A    G+ + A  +  +MEA  V P+   F+ L+ G     E  K  ++L  M    V PD    ++V+D   K
Sbjct:  299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 456          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP180_ARATH (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 45/155 (29.03%), Postives = 73/155 (47.10%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIV 471
            ++ GV  +   Y   ++   KNG + +A +LF  +R    E D+  Y+ LI   C+ G +K A+ LF  L    L     TY  +I  +C  G+M  A  L  +M++KGV    V FNTL+ G  R     +   +   M+++    D  T + +
Sbjct:  286 KKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTI 440          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP422_ARATH (Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 38/169 (22.49%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   19 VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKG----VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSI 513
            V ADT AY   I      G +  A  L + +  +    D+ +Y+ +I+G C +G++  AW L   + +   + + VTY+ ++  +C  G M++A +L  +ME +     ++P+ V +  ++          + + +L RM  R  +P+  T  +++  +++N+  + ++
Sbjct:  161 VCADTVAYNLVIRLFADKGDLNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSRILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRMGNRGCMPNRVTACVLIQGVLENDEDVKAL 329          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PPR31_ARATH (Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.146e-11
Identity = 44/153 (28.76%), Postives = 72/153 (47.06%), Query Frame = 1
Query:   46 TFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISL 504
            T +    K G    + EL   L       +   Y  L+DGL K+G+L+ A  +F  +    + +D    +IMI ALC   +  +A +L  D E      D V  NT++    R  E   V+ ++ +MDE+ V PD +T  I++   +K ++ L
Sbjct:  312 TLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQAVSPDYNTFHILIKYFIKEKLHL 464          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP421_ARATH (Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana GN=At5g46680 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.146e-11
Identity = 43/164 (26.22%), Postives = 80/164 (48.78%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFH-SLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            R  G+  D   Y + I G  KN  +   L+LF  +       D+ SY+ L+    K GR   A+++ H  +    L+  + TYNI++ ALC  G  D A +LF  ++++ V P+ + +N L+ G  ++     V  ++  + +    P+A T + ++ +  K +
Sbjct:   75 REAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHLKSR-VKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTK 237          

HSP 2 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 44/159 (27.67%), Postives = 75/159 (47.17%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALE-LFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            G++ D W+Y T +    K G   EA + L   + +      I +Y+ L+D LCKSG    A ELF  L   V   +++TYNI+I+ LC   ++     +  +++  G  P+ V + T++    +     K ++L  +M +     D      VV  L+K
Sbjct:  113 GLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHLKSRVK-PELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIK 270          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.146e-11
Identity = 41/142 (28.87%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   85 EALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNS 510
            E  ++F +   L  E+D    + LI GLC+SG L+ A +L    P+     +V+T++ +I   C  GK ++A  L   ME + + PD + FN L+ G  +     + ++LL RM  +   P+  T   V+  L+  + +L +
Sbjct:  185 EIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEA 326          

HSP 2 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 36/137 (26.28%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 426
            GV  D       I GLC++G +  AL+L       K   ++ ++S LI G C  G+ + A++L   + +  +  D +T+NI+I  L   G++++  DL   M+ KG  P+   +  ++ G +      +  E++ +M
Sbjct:  197 GVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQM 333          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.146e-11
Identity = 39/148 (26.35%), Postives = 77/148 (52.03%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAST 459
            GV  D ++Y  ++D +CK+G   +A++L++ ++  + +LD+ +Y+ +I  +  S  ++    +F  +       +V T+N +I  LC DG+M  A+ +  +M  +G  PD + +  L     R  + S+++ L  RM    V P   T
Sbjct:  219 GVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLF---SRLEKPSEILSLFGRMIRSGVRPKMDT 363          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP186_ARATH (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.109e-11
Identity = 36/147 (24.49%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   40 YRTFIDGLCKN-GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            Y  +I+GL K  G   EA+++F+ ++  +C+    +Y+ +I+   K+ +  ++W+L+  +       ++ TY  +++A   +G  +KA ++F  ++  G+ PD   +N LM    R        E+   M      PD ++ +I+VD
Sbjct:  231 YNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVD 377          
BLAST of FC928858 vs. ExPASy Swiss-Prot
Match: PP342_ARATH (Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.366e-11
Identity = 44/169 (26.04%), Postives = 79/169 (46.75%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSI 513
            +RHGV  D  +Y T I    KN          + ++     + + +Y+ L+D   K  +++    +   + +     D  TYNIMI+     G +D+  D+  +++  G+ PD  ++NTL+          + V L+  M  RN+IPD  T + +V  L +N+  L +I
Sbjct:  726 KRHGVV-DVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKVTYTNLVTALRRNDEFLEAI 893          
The following BLAST results are available for this feature:
BLAST of FC928858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
PP161_ARATH1.412e-1127.45Pentatricopeptide repeat-containing protein At2g17... [more]
PP413_ARATH1.844e-1129.11Pentatricopeptide repeat-containing protein At5g42... [more]
PP180_ARATH1.844e-1129.03Pentatricopeptide repeat-containing protein At2g32... [more]
PP422_ARATH2.409e-1122.49Pentatricopeptide repeat-containing protein At5g47... [more]
PPR31_ARATH3.146e-1128.76Pentatricopeptide repeat-containing protein At1g10... [more]
PP421_ARATH3.146e-1126.22Pentatricopeptide repeat-containing protein At5g46... [more]
PP230_ARATH3.146e-1128.87Pentatricopeptide repeat-containing protein At3g14... [more]
PP136_ARATH3.146e-1126.35Pentatricopeptide repeat-containing protein At1g80... [more]
PP186_ARATH4.109e-1124.49Pentatricopeptide repeat-containing protein At2g35... [more]
PP342_ARATH5.366e-1126.04Pentatricopeptide repeat-containing protein At4g30... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CB01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928858 ID=FC928858; Name=FC928858; organism=Citrus clementina; type=EST; length=866bp
GGCACGAGGCGTCATGGCGTGGCAGCTGATACCTGGGCATATAGAACCTT
TATTGATGGGCTCTGCAAGAATGGTTATATTGTAGAGGCACTTGAACTAT
TTCGTACTTTGAGAATTCTCAAGTGTGAACTTGATATTCGATCCTACAGC
TGCCTCATTGATGGATTATGTAAATCCGGCAGACTCAAAATTGCATGGGA
ACTATTTCATAGTTTGCCTCGTGGAGTCCTAATAGCAGATGTTGTAACAT
ATAACATCATGATCCATGCGCTTTGTGCTGATGGAAAAATGGACAAGGCA
CATGATTTGTTTCTTGATATGGAAGCAAAAGGTGTAGCACCCGATTGTGT
CGCATTTAACACGCTGATGCTAGGTTGCATCCGCAATAATGAGACATCAA
AAGTTGTTGAACTCCTTCACAGAATGGATGAGAGAAATGTGATACCAGAT
GCATCTACACTTTCAATTGTTGTGGACTTACTTGTAAAGAATGAAATTAG
CTTAAACTCCATTCCACAATTCAAGAGTCAAAGGTAAGTGAGTTTAATAT
TGATTTAGTCGCATGTTTCTTCTGCCTGAAAACCCGATCTGGAGGATCCC
ATTCTTATTAACACGTGTAAAGGAGTGTTGTCTAATGTTGGCATGTTCCT
AGGTTCTGTCCATGGATTCTGTTTGCAGACATGGCTAACTTCTTGTCCAA
CAGATAAGTTTTAAAGTCTTTCAACTTTATGTTGTAAAATAACATTTTCA
TTATTCAATTCATGAGTTTTCCTTCTGTATCACATACTTCTCATTAGCTG
GAAGCGCAAATTTTTTAGGCTTTTCCTGTATGGCCTCTTTTTCTGCTCTA
AATAAAATGGCATTTT
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