FC928876

Overview
NameFC928876
Unique NameFC928876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14474 contig Ccv1_Contig14474:179..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928876 vs. ExPASy Swiss-Prot
Match: PSB1_DROME (Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.526e-39
Identity = 86/199 (43.22%), Postives = 123/199 (61.81%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 599
            D+ VIAADTR+S+GY+I +R  SK+ KL+ + V+ S+G  AD  +L   +  R   Y+H H + M+   +AQ+LS  +Y +RFFPYY  N+L G+DNEGKG VY+YD +G  E+  Y + G+  TL+ P LDNQ+   +  L  A      L++  AV +    F SA ERDIYTGD + I ++ K GI    + LR+D
Sbjct:   39 DFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHCEKATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADK--IKLTKERAVSVASDTFISAAERDIYTGDSVLINIITKDGIEVRTLTLRQD 235          
BLAST of FC928876 vs. ExPASy Swiss-Prot
Match: PSB1_YEAST (Proteasome component C5 OS=Saccharomyces cerevisiae GN=PRE7 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.519e-36
Identity = 86/204 (42.16%), Postives = 119/204 (58.33%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP----LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 599
            D+ V+A DTR  T YSI +R   K+    D  VM+++GF AD  AL K        Y   HN K++S    A+ + + LY KRFFPYY   ++ GLD +GKG VY++D VGSYER    + G+ ++LIMPFLDNQ+   +         V      LS  E + LV+  F SATER I  GD LEI+++ K G+ +E+ EL++D
Sbjct:   38 DFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 241          
BLAST of FC928876 vs. ExPASy Swiss-Prot
Match: PSB1_CAEEL (Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.293e-34
Identity = 80/201 (39.80%), Postives = 122/201 (60.70%), Query Frame = 3
Query:    3 DYCVIAADTRMSTG-YSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKG-GIHREYMELRKD 599
            ++ ++A+DTRM+    +ILTRD  KI  L D  ++ +SGF  DV  L+K+L +R   Y+  +   MS    A+LLS  LYY+RFFPYY+  +L G+D  GKG V++YD +G  ER+GYS+ G+   +I+PFLD Q+     + L        L+   A+ L+K  F  A ER+I TGDK+ +V+   G  +  +++ LR+D
Sbjct:   61 NFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQI---GHVTLSEGYERPELTLDRAISLMKDSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258          
BLAST of FC928876 vs. ExPASy Swiss-Prot
Match: PSB1_TRYBB (Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.788e-33
Identity = 86/205 (41.95%), Postives = 119/205 (58.05%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTR-DYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT----PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 599
            +Y V+ ADTR++  + I TR D SK+ KL D+  +ASSG QAD   LQ++L  R   YQ+ +  K  S   +A+L S  LY +RFFPYY+FN++ G+D +G G  Y+YD VGS E   Y + GS S+ + P LD         LL  Q  VT     L+  EA+ ++K  F  A ERDI+TGD +   ++   G+  E  ELRKD
Sbjct:   62 NYVVLGADTRLNGDFCIHTRSDTSKLFKLTDRIFLASSGMQADRLQLQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFFPYYTFNMIVGIDEKGAGVCYSYDPVGSTEPFRYGTCGSASSFVEPLLD--------CLLTRQHMVTQAPADLTMEEALGMLKNAFTGAAERDIFTGDTVCFHIITADGVGTEMFELRKD 258          
BLAST of FC928876 vs. ExPASy Swiss-Prot
Match: PSB1_SCHPO (Probable proteasome subunit beta type-1 OS=Schizosaccharomyces pombe GN=pam1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.998e-31
Identity = 73/202 (36.14%), Postives = 111/202 (54.95%), Query Frame = 3
Query:    6 YCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP----LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 599
            + ++A DTR   GY+I TR   ++ ++ D  V+ +SGF+AD  AL K +  R  +Y   H ++MS    A ++   LY KRFFPYY +  + G+D EGKG +Y++D VGSYER    + GS +  I PFLDNQ+   +  +  +          L   EA+ +    F SA ER I  GD + + ++ K G+    + L+KD
Sbjct:   24 FAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVGSYEREWCRAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRLLKLEEAMKITTDAFTSAGERHIEVGDSVLVKIITKEGVETRIIPLKKD 225          
BLAST of FC928876 vs. ExPASy Swiss-Prot
Match: PSB1_ENCCU (Probable proteasome subunit beta type-1 OS=Encephalitozoon cuniculi GN=PRE7 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.354e-26
Identity = 75/199 (37.69%), Postives = 114/199 (57.29%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 599
            D+ V+A DTR S+   I +R+ SKI ++ D  ++  +GF AD   +   +   + I Q++ +  ++    A LLS  LY KRFFPYYSF VL G + +GK  VY+YD +GS+  V     GSG ++I P LD+ +   +     A++  T LS+ + + LV   F SA ERD+ T D LE+ V+ +  + RE   LR+D
Sbjct:  100 DFIVVAGDTRHSSSMVINSREMSKIFQVGD-FLLTGTGFYADTHEVYVKMV--YEIRQYEVDDSINIHSAANLLSKILYSKRFFPYYSFCVLSGFE-KGKPYVYSYDPIGSFGSVTCVCSGSGRSMIQPLLDSFIDKKN--WNNAEE--TQLSQEDCIRLVVKAFNSAAERDVKTKDNLEVCVMRENQVMRETFPLRRD 290          
BLAST of FC928876 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.309e-18
Identity = 58/188 (30.85%), Postives = 95/188 (50.53%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 566
            D  V+AAD R S G  I  R+ +KI K+ +   +A +G   D+  L +LL A   +Y  Q  K+MS   +A LL+N +   ++FPY ++ ++GG D + K  +Y+ D VG      Y++ GSG       LD++ K               L+  E + L      +A +RD+++GD + +V + K G
Sbjct:   20 DGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEKPK--LYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKD-------------NLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEG 192          
BLAST of FC928876 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.627e-18
Identity = 57/190 (30.00%), Postives = 97/190 (51.05%), Query Frame = 3
Query:   12 VIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY 581
            V+AADTR S G  I  ++ +KI K+ +   +A +G   D+  L +LL A   +Y+    K+MS   +A LL+N L   ++FPY  + ++GG D + +  +++ D VG      Y++ GSG       LD++ +               +S  + + L       A +RD++TGD L +V + K G ++EY
Sbjct:   23 VLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPR--LFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYRE-------------EMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTITKDG-YKEY 196          
BLAST of FC928876 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 52/192 (27.08%), Postives = 100/192 (52.08%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 575
            D  V+A++ R + G+ I ++   K+ ++ D   M ++G   D + L +L++    +Y+ + ++ M+  G+  L+SN L   R++P     ++GG+D  G G +Y+ DA+ GS E    S+ GSGS +    L++Q +               ++  E +DL      +AT+RD  +G+ +++VV+ K    R
Sbjct:   19 DGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPG-IYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRE-------------NMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFKR 196          
BLAST of FC928876 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.011e-16
Identity = 56/197 (28.43%), Postives = 95/197 (48.22%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELR 593
            D  V+AAD R S G  +  ++ +KI K+ +   +A +G   D+  L +LL A   +Y  Q  K+MS   +A LL+N L   R  PY ++ ++GG D + +  +Y+ D +G      Y + GSG       LD++ +               L   E + +      SA +RD+++GD + +V + + G +RE    R
Sbjct:   20 DGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYRE-------------DLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEG-YRELSNSR 200          
The following BLAST results are available for this feature:
BLAST of FC928876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PSB1_DROME1.526e-3943.22Proteasome subunit beta type-1 OS=Drosophila melan... [more]
PSB1_YEAST3.519e-3642.16Proteasome component C5 OS=Saccharomyces cerevisia... [more]
PSB1_CAEEL3.293e-3439.80Proteasome subunit beta type-1 OS=Caenorhabditis e... [more]
PSB1_TRYBB2.788e-3341.95Proteasome subunit beta type-1 OS=Trypanosoma bruc... [more]
PSB1_SCHPO1.998e-3136.14Probable proteasome subunit beta type-1 OS=Schizos... [more]
PSB1_ENCCU7.354e-2637.69Probable proteasome subunit beta type-1 OS=Encepha... [more]
PSMB_PYRHO3.309e-1830.85Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_PYRFU9.627e-1830.00Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_METTE6.899e-1627.08Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSMB_PYRAB9.011e-1628.43Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CC07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928876 ID=FC928876; Name=FC928876; organism=Citrus clementina; type=EST; length=842bp
CTGATTACTGTGTAATCGCTGCCGACACTCGAATGTCAACCGGTTACAGT
ATCCTCACTCGCGATTACTCCAAAATCTGTAAACTGGCAGACAAATGTGT
TATGGCCTCTTCTGGTTTTCAAGCTGATGTGAAAGCCTTACAAAAACTCT
TGGCAGCAAGGCACTTGATCTATCAGCATCAGCACAACAAGCAAATGAGC
TGCCCTGGAATGGCTCAACTACTCTCCAACACCCTGTACTACAAGCGTTT
CTTTCCTTACTATTCATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGA
AGGGTTGTGTCTACACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGA
TATAGCTCCCAAGGTTCTGGGTCCACGCTCATCATGCCATTCCTGGATAA
CCAACTAAAGTCTCCCAGTCCTCTCCTACTGCCTGCCCAGGATGCTGTTA
CTCCTCTTTCAGAGGCTGAAGCAGTTGATTTGGTCAAAACTTGTTTTGCA
TCAGCAACTGAGAGAGACATATACACGGGAGACAAACTTGAAATTGTTGT
CCTAAACAAAGGTGGTATTCATCGTGAATACATGGAACTGAGGAAGGATT
AATCTCTTTGGCATCATGCCACGCTCGTCAAGCTGAAGTGGGTGGAGCTG
CCACGAGCAAAATTTCAGTGTTCTTATGTTGTCATGGTTTCACATTTTGA
TATGAATCCAGTTTGATATGTCTTTCCTTGCTAGTGGATATGTTGCGGTG
ATGATGCCAATAGGAGACATTAGTTTCTTCTACTCTAACATTAGATCTGG
TGTTATTGTCGTTGAGGATAAATTGTATATTTGGTATTCAAT
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