FC928881

Overview
NameFC928881
Unique NameFC928881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.412e-24
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATD V+SFKS +WFWMT   P PSC +++   W+PS  D    R+PG+G  TNI+NGG+ECG   ++ V +RIG++  +CG  G+
Sbjct:  210 VATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV 295          

HSP 2 Score: 30.0314 bits (66), Expect = 2.412e-24
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPYGINLMAQSM 328
            LG S GD+LDC  QR +G  L+  +M
Sbjct:  293 LGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.137e-24
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATDPV+SFK+ LWFWMT   P PSC +++I  W PSS D    RLPG+G  TNI+NGG+ECG+  +  V +RIG++  +C   G+
Sbjct:  220 VATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGV 305          

HSP 2 Score: 26.5646 bits (57), Expect = 3.137e-24
Identity = 11/26 (42.31%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPYGINLMAQSM 328
            LG + GD+LDC  QR +G  L+  ++
Sbjct:  303 LGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.142e-24
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGIQH 264
            +++DP +SFKS  WFWMT   P PSC  ++I  W PSS+D    R  GYG  TNI+NGG+ECG+  NA V +RIG++  +C   G+ +
Sbjct:  194 LSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSY 281          

HSP 2 Score: 31.187 bits (69), Expect = 3.142e-24
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPYGINLMAQSM 328
            LG S G++LDCY Q P+G  +   SM
Sbjct:  277 LGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.085e-24
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATD ++SFKS +WFWMT   P PSC +++   W+PS  D    R+PG+G  TNI+NGG+ECG   ++ V +RIG++  +CG  G+
Sbjct:  208 VATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV 293          

HSP 2 Score: 28.4906 bits (62), Expect = 4.085e-24
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPYGINLMAQSM 328
            LG S GD+LDC  QR +G  L+  ++
Sbjct:  291 LGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.316e-24
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATD V+SFKS +WFWMT   P PSC +++   W+PS  D    R+PG+G  TNI+NGG+ECG   ++ V +RIG++  +CG  G+
Sbjct:  210 VATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV 295          

HSP 2 Score: 28.4906 bits (62), Expect = 5.316e-24
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPYGINLMAQSM 328
            LG S GD+LDC  QR +G  L+  ++
Sbjct:  293 LGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.523e-23
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +AT+ V+SFKS +WFWMTA  P PSC +++   W PS+ D    RLPGYG  TNI+NGG+ECG   +A V +RIG++  +C   G+
Sbjct:  226 VATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGV 311          

HSP 2 Score: 26.5646 bits (57), Expect = 1.523e-23
Identity = 10/26 (38.46%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPYGINLMAQSM 328
            LG S GD++DC  Q+ +   L+ ++M
Sbjct:  309 LGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.524e-23
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGIQH 264
            +A+D  +SFK+  WFWMT   P PSC  ++  +W PS++D    R+PGYG+ TNI+NGG+ECG   +  V +RIG++  +C   G+ +
Sbjct:  218 VASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSY 305          

HSP 2 Score: 32.3426 bits (72), Expect = 1.524e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPY 301
            LG S GD+LDCY QRPY
Sbjct:  301 LGVSYGDNLDCYNQRPY 317          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23
Identity = 43/82 (52.44%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCG 246
            +ATDPV+SFKS +WFWMT   P PSC +++I  W+PS+ D    RLPG+G  TNI+NGG+ECG+  ++ V +RIG++  +CG
Sbjct:  220 VATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATDP +SFKS  WFWMT   P PSC +++I  W PS +D    R+PG+G  TNI+NGG+ECGQ  NA V +RIG++  +C   G+
Sbjct:  213 LATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGV 298          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.972e-23
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATDPV+SFKS +WFWMT   P PSC +++   W+PS  D    R+PG+G  TNI+NGG+ECG   ++ V +RIG++  +CG  G+
Sbjct:  214 VATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV 299          
The following BLAST results are available for this feature:
BLAST of FC928881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI1_SOLTU2.412e-2447.67Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_SOLTU3.137e-2451.16Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_GOSHI3.142e-2447.73Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_SOLTU4.085e-2446.51Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU5.316e-2447.67Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC1.523e-2350.00Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI3_ORYSJ1.524e-2343.18Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU2.232e-2352.44Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_THECC2.232e-2351.16Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIC_SOLLC4.972e-2348.84Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CC12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928881 ID=FC928881; Name=FC928881; organism=Citrus clementina; type=EST; length=512bp
ATTGCTACTGATCCAGTACTATCATTCAAGTCCACACTCTGGTTCTGGAT
GACTGCTCCCCCCCCGATTCCATCATGCCGCGAACTCCTTATCGACGAAT
GGAAACCATCATCAAATGACGTAGACCCCCGCCGGCTTCCGGGATACGGT
CAAACCACAAATATAGTCAACGGTGGAATTGAATGTGGCCAACGTGGGAA
TGCAGCTGTACATAACCGTATTGGGTACTTTACCACTTTCTGTGGCAAGT
TTGGGATTCAGCACTGGTGACAGTCTTGATTGCTACTACCAACGACCTTA
TGGCATTAATCTGATGGCACAATCTATGTGATCATCAAGATCAACGTTTT
AATAAAATAATCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACA
CTTGTAAGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATTGTAAGT
AAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCACCAAAAAA
AAAAAAAAAAAA
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