FC928881

Overview
NameFC928881
Unique NameFC928881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.467e-22
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATDP++SF++ +WFWMTA    PSC  ++I +W PS  D    R+PGYG  TNI+NGG+EC    N AV +RIG++  +CG   +
Sbjct:  151 VATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNV 236          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.758e-22
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGIQH 264
            +A+D  +SFK+  WFWMT   P PSC  ++  +W P+ ND    R+PGYG  TNI+NGG+ECG   ++ V +RIG++  +C   G+ +
Sbjct:  222 VASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSY 309          

HSP 2 Score: 27.7202 bits (60), Expect = 2.758e-22
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPY 301
            LG S G +LDCY QRP+
Sbjct:  305 LGVSYGANLDCYNQRPF 321          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 3.223e-22
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +A D V++FK+ +WFWMTA PP PSC  ++  +W+PS  D    RLPGYG  TNI+NGG+ECG+  +  V +RIG++  +C  FG+
Sbjct:  227 VANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGV 312          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.892e-22
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATD  +SFK+ LWFWMT     PS  +++   W PS  D    R PGYG  TNIVNGG+ECG   +  V NRIG++  +CG FGI
Sbjct:  230 VATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGI 315          

HSP 2 Score: 28.4906 bits (62), Expect = 7.892e-22
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  248 SLGFSTGDSLDCYYQRPY 301
            + G  TG +LDCY QRP+
Sbjct:  312 AFGIGTGGNLDCYNQRPF 329          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 7.905e-22
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATDP +SFK+ +WFWMTA  P PS   ++  +W PS  D    R+PG+G  TNIVNGGIECG   ++ V +RIG++  +C   G+
Sbjct:  218 VATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGV 303          

HSP 2 Score: 27.335 bits (59), Expect = 7.905e-22
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPY 301
            LG   G++LDCY QRP+
Sbjct:  301 LGVGYGNNLDCYSQRPF 317          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.956e-22
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +A D V+SFK+ LWFWMTA  P PS  +++   W PS  D  P R+PG+G  TNI+NGG+EC    NA + NRIG++  +C   G+
Sbjct:  146 VANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGV 231          

HSP 2 Score: 26.5646 bits (57), Expect = 7.956e-22
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPYG 304
            LG   G++LDC  QRP+G
Sbjct:  229 LGVDPGNNLDCANQRPFG 246          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.033e-21
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATDP +SFK+ LWFWMTA  P PS   ++  +W PS  D    R PG+G  TNI+NGG+ECG   ++ V +RIG++  +C   G+
Sbjct:  166 VATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGV 251          

HSP 2 Score: 29.261 bits (64), Expect = 1.033e-21
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPY 301
            LG   GD+LDCY QRP+
Sbjct:  249 LGVGYGDNLDCYNQRPF 265          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATDP++SFK+ +WFWMT     PSC  ++I +W PS  D    R+PGYG  TNI+NG  ECG   N A  +RIG++  +CG   +
Sbjct:  151 VATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNV 236          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.563e-21
Identity = 39/86 (45.35%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            ++ DPV++FK+ +WFWMT   P PSC  +++ +W+PS  D    R+PGYG  TNI+NGG+ECG+  +A V +RIG++  +C   G+
Sbjct:  212 VSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGV 297          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.007e-21
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATD  + FK+ +WFWMTA PP PS   ++  +W PS  D    R+PG+G  TNI+NGGIECG   ++ V +RIG++  +C   G+
Sbjct:  166 VATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGV 251          

HSP 2 Score: 27.335 bits (59), Expect = 5.007e-21
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPY 301
            LG   G++LDCY QRP+
Sbjct:  249 LGVGYGNNLDCYSQRPF 265          
The following BLAST results are available for this feature:
BLAST of FC928881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHIA_SOLCI2.467e-2247.67Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI1_ORYSJ2.758e-2243.18Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_ARATH3.223e-2248.84Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_ORYSJ7.892e-2250.00Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_HORVU7.905e-2247.6726 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHID_SOLLC7.956e-2247.67Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIC_SECCE1.033e-2146.51Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIA_SOLLC2.089e-2146.51Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI2_BRANA3.563e-2145.35Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI2_HORVU5.007e-2145.3526 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CC12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928881 ID=FC928881; Name=FC928881; organism=Citrus clementina; type=EST; length=512bp
ATTGCTACTGATCCAGTACTATCATTCAAGTCCACACTCTGGTTCTGGAT
GACTGCTCCCCCCCCGATTCCATCATGCCGCGAACTCCTTATCGACGAAT
GGAAACCATCATCAAATGACGTAGACCCCCGCCGGCTTCCGGGATACGGT
CAAACCACAAATATAGTCAACGGTGGAATTGAATGTGGCCAACGTGGGAA
TGCAGCTGTACATAACCGTATTGGGTACTTTACCACTTTCTGTGGCAAGT
TTGGGATTCAGCACTGGTGACAGTCTTGATTGCTACTACCAACGACCTTA
TGGCATTAATCTGATGGCACAATCTATGTGATCATCAAGATCAACGTTTT
AATAAAATAATCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACA
CTTGTAAGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATTGTAAGT
AAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCACCAAAAAA
AAAAAAAAAAAA
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