FC928905

Overview
NameFC928905
Unique NameFC928905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length859
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14474 contig Ccv1_Contig14474:179..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13
Identity = 48/190 (25.26%), Postives = 90/190 (47.37%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILT-RDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 566
            D   +AAD R+   Y  LT  +  +I +L+  C++  +G Q DV    + +  +  +Y  Q ++++     A+++S+ LY  RF PY+   ++ G + +GK  +   D +G  +    +   G+ S  ++   +  +K               +SE E + L++    SAT RD Y+G    +VVL + G
Sbjct:   19 DCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVK-------------PDMSEDEILPLMEQIIRSATNRDAYSGWGAHVVVLRRDG 195          
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 53/188 (28.19%), Postives = 94/188 (50.00%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP-LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 560
            D  V+A + R + G  I ++   KI ++AD+  M ++G   D + L +++     +Y+ +  ++ +   +A L SN L   R+FPY    ++GG+D+EGK  +Y+ D + G+ E     + GSGS      L              +D  TP +   EAV+L      SA +RD  +GD +++V + +
Sbjct:   21 DGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVL--------------EDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITE 193          
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.609e-13
Identity = 49/190 (25.79%), Postives = 88/190 (46.32%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSY-ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 569
            D  ++A D R S G  +  ++  K+ K+ D   M  +G   D +A+ +LL A   +Y+ +  + +     A LLSN L+  R FP+ +  ++GG D      +++ D +G   E   +++ GSGS +    L+                   +S  E + L      SA ERD ++G+ + + V+ K G+
Sbjct:   16 DAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD-------------RDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGV 192          
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 52/186 (27.96%), Postives = 87/186 (46.77%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 560
            D  V A + R S G  I  +   KI K+ +      +G  AD ++L K L A   +Y+ ++++++S    A L +N L+  RF+P+    +LGG+D  G   +Y+ D  G      + S GSGS +    L+++                 L   EAVD+      SA ERD Y+G+ + +  + +
Sbjct:   19 DGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENG-AKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSD-------------ELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTE 190          
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 3
Query:   15 IAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 341
            IA+D R+      +  D+ +I K+ DK  +  SG   DV+ L +  A RH +YQ +  + M     A L+S  LY KRF PY+   V+ GL  + K  + T D++G+ E
Sbjct:   22 IASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKE 130          
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 3
Query:   15 IAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 341
            IA+D R+      +  D+ +I K+ D+  +  SG   DV+ L + L  RH +YQ +  + M     A L+S  LY KRF PY    V+ GL ++ K  + T D++G+ E
Sbjct:   22 IASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKE 130          
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 54/196 (27.55%), Postives = 85/196 (43.37%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMEL 590
            D  ++AAD+R + G  I  R   K+ +L D      SG  AD + +  LL     +Y+ Q     S    A L S   Y  +        ++ G D +  G VY+    GS  +   +  GSGS  I  F D   +               +++ EAV+ +K   A A ERD  +G  + +V+LNK G+ R++  +
Sbjct:   34 DGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGL-IVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFREN-------------MTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGMERKFFAI 215          
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 3
Query:    9 CV-IAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 332
            CV IA+D R+      LT ++ K+  + DK  +  +G   DV+ L +L   +  +Y+ +  +Q+     A L+S+TLY KRF PY+SF V+ G+ N+    +  +D++G
Sbjct:   19 CVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIG 127          
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 51/194 (26.29%), Postives = 94/194 (48.45%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ--MSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 578
            D  ++AAD R S G+ +  +   K+  + DK  + ++G  AD++ +  +L  +++ + +   K   +S  G+A  L+N L   ++FPY    ++GG D++ +  ++  D +G      Y + GSGS + M  L+++      L              EA DL K    SA +RD +TG  + +  ++  G H E
Sbjct:   24 DGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVL--KNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQPR--LFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTL-------------DEAADLAKRAVFSAIKRDSFTGTGVIVAKIHSKG-HEE 199          
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 51/191 (26.70%), Postives = 86/191 (45.03%), Query Frame = 3
Query:    3 DYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 575
            D  ++ AD+R +TG  I  R   K+ ++ DK     SG  AD +A+  ++     +Y  Q+    +    A  +   L Y+      +  ++ G D++ KG VYT    GS  ++ Y+  GSGST I  + D   +               +S+ E VD +K   + A + D  +G  + +VVL   G+ R
Sbjct:   29 DGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST--ETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE-------------NMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVER 204          
The following BLAST results are available for this feature:
BLAST of FC928905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PSB3_GIALA1.135e-1325.26Proteasome subunit beta type-3 OS=Giardia lamblia ... [more]
PSMB_ARCFU3.302e-1328.19Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA9.609e-1325.79Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSMB_METTH1.255e-1227.96Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSB3_PICMA3.651e-1234.86Proteasome subunit beta type-3 OS=Picea mariana GN... [more]
PSB3A_ARATH1.062e-1133.94Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSB6_SCHPO1.388e-1127.55Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB3_SCHPO1.388e-1133.03Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSMB_SULSO2.367e-1126.29Proteasome subunit beta OS=Sulfolobus solfataricus... [more]
PSB6_YEAST2.367e-1126.70Proteasome component PRE3 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CE03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928905 ID=FC928905; Name=FC928905; organism=Citrus clementina; type=EST; length=859bp
CTGATTACTGTGTAATCGCTGCCGACACTCGAATGTCAACCGGTTACAGT
ATCCTCACTCGCGATTACTCCAAAATCTGTAAACTGGCAGACAAATGTGT
TATGGCCTCTTCTGGTTTTCAAGCTGATGTGAAAGCCTTACAAAAACTCT
TGGCAGCAAGGCACTTGATCTATCAGCATCAGCACAACAAGCAAATGAGC
TGCCCTGGAATGGCTCAACTACTCTCCAACACCCTGTACTACAAGCGTTT
CTTTCCTTACTATTCATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGA
AGGGTTGTGTCTACACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGA
TATAGCTCCCAAGGTTCTGGGTCCACGCTCATCATGCCATTCCTGGATAA
CCAACTAAAGTCTCCCAGTCCTCTCCTACTGCCTGCCCAGGATGCTGTTA
CTCCTCTTTCAGAGGCTGAAGCAGTTGATTTGGTCAAAACTTGTTTTGCA
TCAGCAACTGAGAGAGACATATACACGGGAGACAAACTTGAAATTGTTGT
CCTAAACAAAGGTGGTATTCATCGTGAATACATGGAACTGAGGAAGGATT
AATCTCTTTGGCATCATGCCACGCTCGTCAAGCTGAAGTGGGTGGAGCTG
CCACGAGCAAAATTTCAGTGTTCTTATGTTGTCATGGTTTCACATTTTGA
TATGAATCCAGTTTGATATGTCTTTCCTTGCTAGTGGATATGTTGCGGTG
ATGATGCCAATAGGAGACATTAGTTTCTTCTACTCTAACATTAGATCTGG
TGTTATTGTCGTTGAGGATAAATTGTATATTTGGTATCAAATTACATCTG
GTGTGCATC
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