FC928905

Overview
NameFC928905
Unique NameFC928905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length859
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14474 contig Ccv1_Contig14474:179..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 35/109 (32.11%), Postives = 56/109 (51.38%), Query Frame = 3 
Query:   15 IAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 341
            IA+D R+      +  D+ ++ K+ DK  +  SG   D + L + L  RH +YQ +  + M     A L+S  LY KRF PY+   V+ GL  + +  + T D +G+ E
Sbjct:   22 IASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKE 130
[Close]
BLAST of FC928905 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = 3 
Query:   15 IAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 341
            IA+D R+      +  D+ +I K+ D   +  SG   DV+ L + L  RH +YQ +  + M     A L+S  LY KRF P+    V+ GL ++ K  + T D++G+ E
Sbjct:   22 IASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKE 130
The following BLAST results are available for this feature:
BLAST of FC928905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PSB3_ORYSJ4.037e-1132.11Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3B_ARATH5.273e-1133.03Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CE03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928905 ID=FC928905; Name=FC928905; organism=Citrus clementina; type=EST; length=859bp
CTGATTACTGTGTAATCGCTGCCGACACTCGAATGTCAACCGGTTACAGT
ATCCTCACTCGCGATTACTCCAAAATCTGTAAACTGGCAGACAAATGTGT
TATGGCCTCTTCTGGTTTTCAAGCTGATGTGAAAGCCTTACAAAAACTCT
TGGCAGCAAGGCACTTGATCTATCAGCATCAGCACAACAAGCAAATGAGC
TGCCCTGGAATGGCTCAACTACTCTCCAACACCCTGTACTACAAGCGTTT
CTTTCCTTACTATTCATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGA
AGGGTTGTGTCTACACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGA
TATAGCTCCCAAGGTTCTGGGTCCACGCTCATCATGCCATTCCTGGATAA
CCAACTAAAGTCTCCCAGTCCTCTCCTACTGCCTGCCCAGGATGCTGTTA
CTCCTCTTTCAGAGGCTGAAGCAGTTGATTTGGTCAAAACTTGTTTTGCA
TCAGCAACTGAGAGAGACATATACACGGGAGACAAACTTGAAATTGTTGT
CCTAAACAAAGGTGGTATTCATCGTGAATACATGGAACTGAGGAAGGATT
AATCTCTTTGGCATCATGCCACGCTCGTCAAGCTGAAGTGGGTGGAGCTG
CCACGAGCAAAATTTCAGTGTTCTTATGTTGTCATGGTTTCACATTTTGA
TATGAATCCAGTTTGATATGTCTTTCCTTGCTAGTGGATATGTTGCGGTG
ATGATGCCAATAGGAGACATTAGTTTCTTCTACTCTAACATTAGATCTGG
TGTTATTGTCGTTGAGGATAAATTGTATATTTGGTATCAAATTACATCTG
GTGTGCATC
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