FC928906

Overview
NameFC928906
Unique NameFC928906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15015 contig Ccv1_Contig15015:1..542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP8_ARATH (Serine carboxypeptidase-like 8 OS=Arabidopsis thaliana GN=SCPL8 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.350e-23
Identity = 48/115 (41.74%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   22 DKSLSYTTNVLSSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 366
            ++++ Y  +++SS+ YH N    GY+ LIYSGD D+   ++ T+ WI+SLN +    W+PW+++ Q+AG+   Y+ K    +TFAT+KG GHTA EY+P E   M  RW +  PL
Sbjct:  324 NRTIPYNHDIVSSIPYHMNNSISGYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNK----MTFATIKGGGHTA-EYRPNETFIMFQRWISGQPL 433          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: CBP1_HORVU (Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CBP1 PE=1 SV=4)

HSP 1 Score: 107.457 bits (267), Expect = 4.350e-23
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   55 SSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFA 354
            S + YH+N   +GY+ +I+SGD DM   + G+E W KSL   +   W+PW+ +GQV+G    Y E   + LTFAT+KGAGHT PEYKP+E     +RW A
Sbjct:  400 SMIAYHKNLTSQGYRAIIFSGDHDMCVPFTGSEAWTKSLGYGVVDSWRPWITNGQVSG----YTEGYEHGLTFATIKGAGHTVPEYKPQEAFAFYSRWLA 495          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP5_ARATH (Serine carboxypeptidase-like 5 OS=Arabidopsis thaliana GN=SCPL5 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.682e-23
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   31 LSYTTNVLSSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 366
            + YT ++ SSV YH N    GY+ LIYSGD D+   ++ T+ W++SLN +I   W+PW++  Q+ G+   YA K    +TFATV+G GHTA EYKP E   M +RW    PL
Sbjct:  332 IPYTHDIKSSVPYHMNNSINGYRSLIYSGDHDLNVPFLATQAWVRSLNYSIIDNWRPWMIKDQIGGYTKTYANK----MTFATVRGGGHTA-EYKPYETYIMFHRWINGQPL 438          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP9_ARATH (Serine carboxypeptidase-like 9 OS=Arabidopsis thaliana GN=SCPL9 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   19 EDKSLSYTTNVLSSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 366
            + + + Y +++ SS+ YH N    GY+ LI+SGD D+   +  T+ WIKSLN +I   W+PW++ GQ+AG+   Y+ K    +TFATVKG GHTA EY P+E   M  RW +  PL
Sbjct:  327 DHRGIPYKSDIRSSIPYHMNNSINGYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNK----MTFATVKGGGHTA-EYLPEESSIMFQRWISGQPL 437          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP10_ARATH (Serine carboxypeptidase-like 10 OS=Arabidopsis thaliana GN=SCPL10 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   28 SLSYTTNVLSSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 366
            ++ Y  N++SSV YH +    GY+ LIYSGD D+   +  T+ WIKSLN +I   W+PW+++ Q+AG+   Y+ K    +TFATVKG GHTA EY P E   M  RW +  PL
Sbjct:  330 TIPYDNNIISSVPYHMDNSINGYRSLIYSGDHDITMPFQATQAWIKSLNYSIVDDWRPWMINDQIAGYTRTYSNK----MTFATVKGGGHTA-EYLPNESSIMFQRWISGQPL 437          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP4_ARATH (Serine carboxypeptidase-like 4 OS=Arabidopsis thaliana GN=SCPL4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   25 KSLSYTTNVLSSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 366
            + + Y  ++ SSV YH N    GY+ LIYSGD D+   ++GT+ WI+SLN +I   W+PW++  Q+AG+   Y  K    +TFATV G GHTA E+ PKE   M  RW    PL
Sbjct:  333 RGIPYNHDIKSSVPYHMNNSIDGYRSLIYSGDHDIQVPFLGTQAWIRSLNYSIIDDWRPWMIKDQIAGYTTSYVNK----MTFATVTGGGHTA-EFTPKETFMMFQRWINGQPL 441          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP20_ARATH (Serine carboxypeptidase-like 20 OS=Arabidopsis thaliana GN=SCPL20 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   31 LSYTTNVLSSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRW 348
            LS+  +  S +D+HRN    GY+ LIYSGD DM   + G+E W KSL   +   W+ W+ + QVAG+   YA      LTF T+KGAGHT PEYKP+E L+  +R+
Sbjct:  390 LSFYHDAGSMIDFHRNLTLSGYRALIYSGDHDMCVPFTGSEAWTKSLGYKVIDEWRAWISNDQVAGYTQGYAN----NLTFLTIKGAGHTVPEYKPREALDFYSRF 491          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP12_ARATH (Serine carboxypeptidase-like 12 OS=Arabidopsis thaliana GN=SCPL12 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   31 LSYTTNVLSSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 366
            + Y  ++ +S+ YH N    GY+ LIYSGD D+   ++ T+ WIKSLN +I   W+PW++  Q+AG+   Y+ K    +TFATVKG+GHTA EYKP E   M  RW + + L
Sbjct:  329 IPYNKDINNSIPYHMNNSISGYRSLIYSGDHDLVVPFLATQAWIKSLNYSIIHEWRPWMIKDQIAGYTRTYSNK----MTFATVKGSGHTA-EYKPNETFIMFQRWISGHDL 435          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP3_ARATH (Serine carboxypeptidase-like 3 OS=Arabidopsis thaliana GN=SCPL3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.810e-22
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   31 LSYTTNVLSSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 366
            + Y  ++ SS+ YH N    GY+ LIYSGD D    ++GT+ WI+SLN ++   W+PW++  Q+AG+   YA K    +TFAT++G GHT  E+KP+E   M  RW    PL
Sbjct:  335 IPYNYDIKSSIPYHMNNSINGYRSLIYSGDHDFEVPFLGTQAWIRSLNYSVIDDWRPWMIKDQIAGYTRTYANK----MTFATIRGGGHTI-EFKPEEASIMFQRWIKGQPL 441          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP11_ARATH (Serine carboxypeptidase-like 11 OS=Arabidopsis thaliana GN=SCPL11 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   28 SLSYTTNVLSSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 366
            S  Y  ++ SSV YH N    GY+ LIYSGD D+   ++ T+ WIKSLN +I   W+PW++  Q+ G+   Y+ K    +TFATVKG+GHTA E KP+E   M  RW    PL
Sbjct:  326 SKPYNKDIKSSVPYHMNNSVSGYRSLIYSGDHDLVVPFLATQAWIKSLNYSIIDEWRPWMIRDQITGYTRTYSNK----MTFATVKGSGHTA-ENKPQESFIMFRRWINGQPL 433          
The following BLAST results are available for this feature:
BLAST of FC928906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SCP8_ARATH4.350e-2341.74Serine carboxypeptidase-like 8 OS=Arabidopsis thal... [more]
CBP1_HORVU4.350e-2347.00Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CB... [more]
SCP5_ARATH5.682e-2345.54Serine carboxypeptidase-like 5 OS=Arabidopsis thal... [more]
SCP9_ARATH7.420e-2343.97Serine carboxypeptidase-like 9 OS=Arabidopsis thal... [more]
SCP10_ARATH7.420e-2346.02Serine carboxypeptidase-like 10 OS=Arabidopsis tha... [more]
SCP4_ARATH2.820e-2244.74Serine carboxypeptidase-like 4 OS=Arabidopsis thal... [more]
SCP20_ARATH2.820e-2246.23Serine carboxypeptidase-like 20 OS=Arabidopsis tha... [more]
SCP12_ARATH2.820e-2244.64Serine carboxypeptidase-like 12 OS=Arabidopsis tha... [more]
SCP3_ARATH4.810e-2242.86Serine carboxypeptidase-like 3 OS=Arabidopsis thal... [more]
SCP11_ARATH8.204e-2246.02Serine carboxypeptidase-like 11 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CE04RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928906 ID=FC928906; Name=FC928906; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCGAATCGGCACGAGGATAAAAGTTTATCTTACACAACAAATGT
CCTGAGTAGTGTTGATTATCATCGCAACTTCATCAAGAAGGGCTACCAAG
TTTTGATTTACAGTGGCGATGTGGACATGGGAACTTCATATGTAGGCACA
GAAACATGGATTAAGTCATTAAATTTGACGATTGATAGTGGCTGGCAGCC
GTGGCTTGTGGACGGCCAAGTTGCAGGATTTTGGATGCGGTATGCTGAAA
AGAACCTTTACCGTTTGACATTTGCCACAGTAAAGGGAGCAGGTCATACG
GCTCCAGAGTACAAGCCTAAGGAATGCCTCGAAATGATTAACAGGTGGTT
TGCCATGTATCCTCTTTGAAGCCATGTTCAGTACTTTGAGAATGGAAATG
TATTGGATTATGTTGTATTGCATTAACATTATATTACAATAATGTTGTAC
GGTGTTTAGCGCTGCACTGTACTGTATTAATTTCATATAATATTACATTA
ATGTTATTTAAATGTATTAGTAGATAAAAAAAAAAAAAAAAA
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