FC928906

Overview
NameFC928906
Unique NameFC928906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15015 contig Ccv1_Contig15015:1..542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: PPGB_BOVIN (Lysosomal protective protein OS=Bos taurus GN=CTSA PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.645e-12
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 1
Query:   94 YQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYP 363
            Y++L+Y+GDVDM  +++G E ++ SLN  ++   +PWLVD   +G  +    K    + F T+KGAGH  P  KP+  L M +R+    P
Sbjct:  389 YRILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVDYGESGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPQAALTMFSRFLNRQP 478          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP29_ARATH (Serine carboxypeptidase-like 29 OS=Arabidopsis thaliana GN=SCPL29 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 1
Query:    4 VPNRHEDKSLSYTTNVLSSVDYHRNFIKKGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL*SH 375
            V + H + S S   N+     YH   I  G ++ ++SGD D       T   I +LNL   S + PW +DGQV G+  +YA      L F TV+GAGH  P ++PK+ L +   + +  PL +H
Sbjct:  352 VVSEHWNDSPSSVLNI-----YHE-LIAAGLRIWVFSGDADAVVPVTSTRYSIDALNLRPLSAYGPWYLDGQVGGWSQQYA-----GLNFVTVRGAGHEVPLHRPKQALALFKAFISGTPLSTH 464          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: SCP37_ARATH (Serine carboxypeptidase-like 37 OS=Arabidopsis thaliana GN=SCPL37 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   88 KGYQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 366
            +G +V+IY+GDVD+   +  T   +K +NLT+   ++PW   GQ+ GF   Y       LTF TVKGAGH+ P  +P   L +   +    PL
Sbjct:  395 EGVRVMIYNGDVDLEIPFASTLAVVKEMNLTVVKEFRPWFTGGQLGGFTEDYKG----NLTFVTVKGAGHSVPTDQPIHALNIFTSFIRNTPL 483          
BLAST of FC928906 vs. ExPASy Swiss-Prot
Match: PPGB_HUMAN (Lysosomal protective protein OS=Homo sapiens GN=CTSA PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   94 YQVLIYSGDVDMGTSYVGTETWIKSLNLTIDSGWQPWLV-----DGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYP 363
            YQ+L+Y+GDVDM  +++G E ++ SLN  ++   +PWLV       Q+AGF      K    + F T+KGAGH  P  KP     M +R+    P
Sbjct:  390 YQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGF-----VKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 479          
The following BLAST results are available for this feature:
BLAST of FC928906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PPGB_BOVIN2.645e-1237.78Lysosomal protective protein OS=Bos taurus GN=CTSA... [more]
SCP29_ARATH5.893e-1234.68Serine carboxypeptidase-like 29 OS=Arabidopsis tha... [more]
SCP37_ARATH1.005e-1137.63Serine carboxypeptidase-like 37 OS=Arabidopsis tha... [more]
PPGB_HUMAN3.820e-1137.89Lysosomal protective protein OS=Homo sapiens GN=CT... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CE04RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928906 ID=FC928906; Name=FC928906; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCGAATCGGCACGAGGATAAAAGTTTATCTTACACAACAAATGT
CCTGAGTAGTGTTGATTATCATCGCAACTTCATCAAGAAGGGCTACCAAG
TTTTGATTTACAGTGGCGATGTGGACATGGGAACTTCATATGTAGGCACA
GAAACATGGATTAAGTCATTAAATTTGACGATTGATAGTGGCTGGCAGCC
GTGGCTTGTGGACGGCCAAGTTGCAGGATTTTGGATGCGGTATGCTGAAA
AGAACCTTTACCGTTTGACATTTGCCACAGTAAAGGGAGCAGGTCATACG
GCTCCAGAGTACAAGCCTAAGGAATGCCTCGAAATGATTAACAGGTGGTT
TGCCATGTATCCTCTTTGAAGCCATGTTCAGTACTTTGAGAATGGAAATG
TATTGGATTATGTTGTATTGCATTAACATTATATTACAATAATGTTGTAC
GGTGTTTAGCGCTGCACTGTACTGTATTAATTTCATATAATATTACATTA
ATGTTATTTAAATGTATTAGTAGATAAAAAAAAAAAAAAAAA
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