FC928965

Overview
NameFC928965
Unique NameFC928965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1879 contig Ccv1_Contig1879:372..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.479e-30
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI +++EGTLYVGF +S+Q NN L AKVL+ GDVFVFP G+IHFQ N+GK  A A++ L+SQ  G +TIA+TVFG+NP I P+ L +AFQLD ++VK+LQ KF
Sbjct:  117 EILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKF 219          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.479e-30
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI +++EGTLYVGF +S+Q NN L AKVL+ GDVFVFP G+IHFQ N+GK  A A++ L+SQ  G +TIA+TVFG+NP I P+ L +AFQLD ++VK+LQ KF
Sbjct:  117 EILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKF 219          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI  VLEG+LYVGF TS+   N L  KV+NKGDVFVFP+GL+HFQFN G T+A A  AL+SQ PG +T+A+ VFG+ PSI  D L KAFQ++  +V  +Q KF
Sbjct:  122 EILTVLEGSLYVGFVTSNP-ENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPSITDDILAKAFQVEKTVVDQIQAKF 223          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.473e-28
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI  VLEG+LYVGF  S+   N L  KVLNKGDVFVFPQGL+HFQFN G  NA A +AL+SQ PG +T+ + VFG+ PSI+ D L KAFQ+D NI+  +Q +F
Sbjct:  122 EIPTVLEGSLYVGFVISNP-ENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGSKPSISDDILAKAFQVDKNIIDRIQAQF 223          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 9.473e-28
Identity = 59/103 (57.28%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI +V +GTL VGF +S+Q  N L AK LN GDVFVFP+GLIHFQFN+G T A A +AL+SQ  G +TIA+T+FG+ P ++P+ L +AFQ+D N V++LQ +F
Sbjct:  120 EILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAFQMDVNAVRNLQARF 222          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.600e-27
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI LV EGTL+VGF +S    N L  K LNKGDVFVFP+GLIHFQ NIGK  A A+++L+SQ PG + I +T+FG+ P I+P+ L KAFQLDP ++  LQ KF
Sbjct:  121 EILLVQEGTLFVGFFSSFP-ENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPIDPNVLAKAFQLDPKVIIQLQKKF 222          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.140e-27
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EIF VLEGTLYVGF TS+  +N L++KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D  I+  LQ +F
Sbjct:  119 EIFTVLEGTLYVGFVTSNP-DNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAFQVDKKIIDLLQAQF 221          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.047e-26
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI  +LEG+LYVGF TS+   N L  KVLNKGDVFVFPQGLIHFQFN G  +  A +AL+SQ PG +TIA+ VFG+ P I+ D L KAFQ++  IV  +Q +F
Sbjct:  115 EILTILEGSLYVGFVTSNP-ENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAFQVEKKIVDRIQAQF 216          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.368e-26
Identity = 66/110 (60.00%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  V EGTLYVGF TS+Q N  N L  K LNKGDVFVFPQGLIHFQFN      A A +AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D   V  LQ +F   N
Sbjct:  118 EILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.333e-26
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  VLEGTLYVGF TS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ D L KAFQ++   +  LQ +F   N
Sbjct:  117 EILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQVEKGTIDWLQAQFWENN 223          
The following BLAST results are available for this feature:
BLAST of FC928965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
GL120_ARATH3.479e-3061.17Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL118_ARATH3.479e-3061.17Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL23_ORYSJ5.554e-2859.22Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL22_ORYSJ9.473e-2860.19Putative germin-like protein 2-2 OS=Oryza sativa s... [more]
GL18_ARATH9.473e-2857.28Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL112_ARATH3.600e-2759.22Putative germin-like protein subfamily 1 member 12... [more]
GL82_ORYSJ6.140e-2762.50Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GL21_ORYSJ1.047e-2659.22Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL121_ORYSJ1.368e-2660.00Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL87_ORYSJ2.333e-2659.26Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BD11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928965 ID=FC928965; Name=FC928965; organism=Citrus clementina; type=EST; length=526bp
CTCGTGCTTTATTCGGCACGAGGCGAAATCTTCTTAGTCCTGGAAGGAAC
TCTTTATGTCGGTTTTGCGACATCAGACCAACTGAATAACACACTCATCG
CAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATT
CACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCT
AAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTTGGAG
CCAATCCTTCAATCAATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGAC
CCAAACATAGTGAAAGATCTTCAAAATAAGTTCATTAATGGCAATTAGGA
GAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGAGGCTGTA
TTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGAGGTC
TCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACATAATT
GTTATTGTTAAAAAAAAAAAAAAAAA
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