FC928965

Overview
NameFC928965
Unique NameFC928965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1879 contig Ccv1_Contig1879:372..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.980e-26
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  VLEGTLYVGF TS+  NNTL +KVLNKGDVFVFPQGLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ + L KAFQ++   +  LQ +F   N
Sbjct:  116 EILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.980e-26
Identity = 66/110 (60.00%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  VLEGTLYVGF TS+Q N  N L  K LNKGDVFVFPQGLIHFQFN      A A +AL+SQ PG +TIA+ VFG+N  I+ D L KAFQ+D   V  LQ +F   N
Sbjct:  118 EILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNSPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.198e-26
Identity = 65/110 (59.09%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  V+EG+LYVGF TS+Q N  N L  K LNKGDVFVFP+GLIHFQFN      AAA  AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D   V  LQ +F   N
Sbjct:  118 EILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.867e-26
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            +IFLV++G L+VGF +S++ N TL  KVL  GDVFVFP+GLIHF  NIG+TNA   SA  SQ PG + I D VFG+ P I+P  L KAF LD N VK LQ  F
Sbjct:  119 QIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAFALDYNKVKYLQAVF 221          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.158e-25
Identity = 63/101 (62.38%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQ 324
            EIF VLEGTLYVGF TS+  +N L +KVLNKGDVFVFP+GLIHFQFN+     A A SA++SQ PG +TIA+ VF +NP I+ D L KAFQ+D  I+  LQ
Sbjct:  119 EIFTVLEGTLYVGFVTSNP-DNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRSNPPISDDILAKAFQVDKKIIDLLQ 218          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.158e-25
Identity = 64/110 (58.18%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  VLEG+LYVGF TS+Q N  N L  K LNKGDVFVFPQGLIHFQFN      A A +AL+SQ PG +TIA+ VFG++P I+ D L KAFQ+D   +  LQ +F   N
Sbjct:  118 EILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSHPPISDDVLAKAFQVDKKAMDWLQAQFWENN 227          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.975e-25
Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  VLEGTLYVGF TS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+   L KAFQ++   +  LQ +F   N
Sbjct:  116 EILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.369e-25
Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  VLEGTLYVGF TS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+   L KAFQ++   +  LQ +F   N
Sbjct:  116 EILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDIVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.280e-24
Identity = 62/108 (57.41%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  VLEGTLYVGF TS+  NNTL +KVL KGDVFVFP GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ + L KAFQ++   +  LQ +F   N
Sbjct:  117 EILTVLEGTLYVGFVTSNP-NNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQAQFWENN 223          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.280e-24
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI +V +G L VGF +S+Q NN L  KVL +GDVFVFP GLIHFQ N+ +T A A++   SQ PG + IAD VFG+NPSI  + L KAFQLD  +V+ L   F
Sbjct:  120 EILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSIPQEVLAKAFQLDVKLVRFLHIVF 222          
The following BLAST results are available for this feature:
BLAST of FC928965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
GL85_ORYSJ3.980e-2659.26Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL122_ORYSJ3.980e-2660.00Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]
GL123_ORYSJ5.198e-2659.09Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL14_ARATH8.867e-2658.25Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL81_ORYSJ1.158e-2562.38Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL124_ORYSJ1.158e-2558.18Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
GL88_ORYSJ1.975e-2558.33Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL810_ORYSJ3.369e-2558.33Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL86_ORYSJ1.280e-2457.41Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL16_ARATH1.280e-2455.34Germin-like protein subfamily 1 member 6 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BD11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928965 ID=FC928965; Name=FC928965; organism=Citrus clementina; type=EST; length=526bp
CTCGTGCTTTATTCGGCACGAGGCGAAATCTTCTTAGTCCTGGAAGGAAC
TCTTTATGTCGGTTTTGCGACATCAGACCAACTGAATAACACACTCATCG
CAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATT
CACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCT
AAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTTGGAG
CCAATCCTTCAATCAATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGAC
CCAAACATAGTGAAAGATCTTCAAAATAAGTTCATTAATGGCAATTAGGA
GAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGAGGCTGTA
TTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGAGGTC
TCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACATAATT
GTTATTGTTAAAAAAAAAAAAAAAAA
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