FC928965

Overview
NameFC928965
Unique NameFC928965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1879 contig Ccv1_Contig1879:372..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EIFLV++G L+VGF +S++ N TL  KVL  GDVFVFP+GLI F  NIGKTNA   +A  SQ PG + I + VFG+ P I+P  L KAF LD N VK  Q  F
Sbjct:  119 EIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKVLAKAFALDFNKVKYFQAVF 221          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.852e-24
Identity = 62/108 (57.41%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  VLEGTL+VGF TS+  NNTL +KVLNKGDVFVFP GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ + L KAFQ+    +  LQ +F   N
Sbjct:  116 EILTVLEGTLHVGFVTSNP-NNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGSKPPISDEVLAKAFQVGKGTIDWLQAQFWENN 222          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.865e-24
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI  VLEGTLYVGF TS+  +N   +KVLNKGDVFVFP GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ D L KAFQ++   +  LQ +F   N
Sbjct:  116 EILTVLEGTLYVGFVTSNP-DNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGSKPPISDDVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.354e-24
Identity = 55/109 (50.46%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    7 LYSARGEIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            ++    EI LV++G L VGF +S+  N TL +K+L  GDVFV P GL+ F  NIGKTNA A  A+ SQ PG +++ D VFG+ P I+P  L KAF LD NIV+ L+  F
Sbjct:  110 IHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGSKPPIDPKILAKAFALDINIVRYLRKVF 218          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.415e-23
Identity = 54/109 (49.54%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    7 LYSARGEIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            ++    +I LVL+G L VGF +S+  N TL +K+L  GDVF FP GL+ F  N GKT+A A   + SQ PG + I D VFG+NP I+P  L KAF LD NIV+ +Q  F
Sbjct:  113 IHPRASQIILVLKGQLSVGFVSSNDYNYTLFSKILYPGDVFAFPIGLVQFHANTGKTHAVAIGVVGSQDPGVIPIGDAVFGSNPLIDPKLLAKAFALDVNIVRHVQRVF 221          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.198e-22
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            E+  VLEGTLYVGF TS+   N L +KV++KGDVFVFP+ +IHFQ N+     A A SAL+SQ PG +TIA  +FG+ P I+ D L KAFQ++  ++  L+++F   N
Sbjct:  118 ELLTVLEGTLYVGFVTSNP--NRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAFQVEKKVIDWLKSQFSENN 223          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.565e-22
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            E+  VLEGTLYVGF TS+   N L +KV++KGD FVFP+ +IHFQ N+     A A S+LNSQ PG +TIA  VFG+ P I+ D L KAFQ++  ++  L+++F   N
Sbjct:  118 ELLTVLEGTLYVGFVTSNP--NRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGSKPPISDDVLTKAFQVEKKVIDWLKSQFWESN 223          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.565e-22
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            E+  VLEGTLYVGF TS+   N L +KV+ KGDVFVFP+ +IHFQ N+     A A SAL+SQ PG +TIA  VFG+ P I+ D L KAFQ++  ++  LQ++F   N
Sbjct:  118 ELLTVLEGTLYVGFVTSNP--NKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGSQPPISDDVLTKAFQVEKKLIDWLQSQFWENN 223          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.044e-22
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI  V EGTL VGF T+    N L  + ++KG+VFVFP+GL+HFQ N G T+A A +A NSQ PG  +IADT+FGA P +  D L +AFQ+D  +V+ +++KF
Sbjct:  119 EIMFVAEGTLDVGFVTTA---NKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESIKSKF 218          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.670e-22
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI  VL+GTL VGF TS+Q    N    K+L  GDVFVFPQGLIHFQ N G   A A +AL+SQ PG +TIA+ VFG+ P I  D L KAF +D + V  +Q KF
Sbjct:  122 EILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGSTPPILDDVLAKAFMIDKDQVDWIQAKF 226          
The following BLAST results are available for this feature:
BLAST of FC928965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
GL15_ARATH1.672e-2456.31Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL89_ORYSJ2.852e-2457.41Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL811_ORYSJ4.865e-2456.48Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]
GL13_ARATH6.354e-2450.46Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL12_ARATH2.415e-2349.54Putative germin-like protein subfamily 1 member 2 ... [more]
GL83_ORYSJ1.198e-2250.93Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL84_ORYSJ1.565e-2250.93Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL812_ORYSJ1.565e-2252.78Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL32_ORYSJ2.044e-2251.46Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL41_ORYSJ2.670e-2255.24Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BD11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928965 ID=FC928965; Name=FC928965; organism=Citrus clementina; type=EST; length=526bp
CTCGTGCTTTATTCGGCACGAGGCGAAATCTTCTTAGTCCTGGAAGGAAC
TCTTTATGTCGGTTTTGCGACATCAGACCAACTGAATAACACACTCATCG
CAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATT
CACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCT
AAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTTGGAG
CCAATCCTTCAATCAATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGAC
CCAAACATAGTGAAAGATCTTCAAAATAAGTTCATTAATGGCAATTAGGA
GAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGAGGCTGTA
TTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGAGGTC
TCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACATAATT
GTTATTGTTAAAAAAAAAAAAAAAAA
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