FC928965

Overview
NameFC928965
Unique NameFC928965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1879 contig Ccv1_Contig1879:372..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGF--ATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFG-ANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI  V +G L VGF  AT+   ++ LI +V+ KG VFVFP+GL+H++ ++G+  A A SA +SQ PG    AD +FG ++P++  D L +AFQ+D  +V+++++KF
Sbjct:  127 EILFVADGLLEVGFVVATAAPASSRLITRVVPKGGVFVFPRGLLHYERSVGEKPAVAISAFDSQLPGTQAAADALFGSSSPAVPTDVLARAFQVDGGVVENIKSKF 232          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.887e-18
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFING 342
            E+ +VL G L VG   S    N   ++V+  G+ FV P+GL+HFQFN+GKT A    + NSQ PG V +  T+FG+NP I    L KA ++D  +V+ L++KF  G
Sbjct:  121 EVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGG 226          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.161e-17
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNK 330
            E+  VL+GTL VGF T+    N L  K ++ GDVFVFP+GL+HFQ N G T AA  SA NSQ PG  ++A T+F A+P +    L KAFQ+    V+ ++++
Sbjct:  117 EMVFVLQGTLDVGFITTA---NKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAFQVGTKEVEKIKSR 215          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.161e-17
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNK 330
            E+  VLEG L VGF T+    N L  K +  G+VFVFP+GL+HFQ N GK+ A+  SA NSQ PG  ++A T+F A P++  D L K FQ+   +V  ++ +
Sbjct:  116 EVVYVLEGELEVGFITTA---NKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTFQVGSKMVDKIKER 214          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.516e-17
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFING 342
            EI +V++G L VG   S    N L ++V+  G+ F+ P+GL+HFQFN+GKT A+   + NSQ PG V +  T+FG+NP I    L KA +++  +V+ L++KF  G
Sbjct:  118 EIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLTKALRVEAGVVELLKSKFAAG 223          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.516e-17
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    7 LYSARGEIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            L+    E   VLEG L+VGF T+      LI+K +NKGDVFVFP+ L+HFQ N  K  A+  +A +SQ PG   +  ++FG+NP I  D L KAF      ++ ++ KF
Sbjct:  110 LHPRASEAIFVLEGRLFVGFLTT---TGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAFGAAAPEIQKIKGKF 215          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GER2_WHEAT (Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.516e-17
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFING 342
            EI +V++G L VG   S    N L ++V+  G+ F+ P+GL+HFQFN+GKT A+   + NSQ PG V +  T+FG+NP I    L KA +++  +V+ L++KF  G
Sbjct:  118 EIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLTKALRVEARVVELLKSKFAAG 223          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: OXO1_HORVU (Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI +V++G L VG   S    N L ++V+  G+ FV P+GL+HFQFN+GKT A    + NSQ PG V +  T+FG++P I    L KA +++  +V+ L++KF  G+
Sbjct:   95 EIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGGS 201          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.377e-17
Identity = 48/103 (46.60%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            E+  VLEG L VGF T+    N LIAK + KG+ FVFP+GL+HFQ N G   A   +  NSQ PG V I  T+F A P +  + L KAFQ+    V+ +++KF
Sbjct:  114 EMVFVLEGQLDVGFITT---TNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLFNATPPVPDNVLTKAFQIGTKEVQKIKSKF 213          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFINGN 345
            EI +V++G L VG   S    N L ++V+  G+ F+ P+GL+HFQFN+GKT A+     NSQ P  V +  T+FG+NP I    L KA +++  +V+ L++KF  G+
Sbjct:  118 EIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGSNPPIPKPVLTKALRVEAGVVELLKSKFAGGS 224          
The following BLAST results are available for this feature:
BLAST of FC928965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
GL14_ORYSJ6.805e-1843.40Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]
GL33_ORYSJ8.887e-1843.40Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL52_ORYSJ1.161e-1747.06Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL22_ARATH1.161e-1745.10Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
OXO2_HORVU1.516e-1742.45Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL23_ARATH1.516e-1743.12Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GER2_WHEAT1.516e-1742.45Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 S... [more]
OXO1_HORVU2.586e-1742.06Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1[more]
RHRE_PEA3.377e-1746.60Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
GER3_WHEAT4.411e-1741.12Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BD11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928965 ID=FC928965; Name=FC928965; organism=Citrus clementina; type=EST; length=526bp
CTCGTGCTTTATTCGGCACGAGGCGAAATCTTCTTAGTCCTGGAAGGAAC
TCTTTATGTCGGTTTTGCGACATCAGACCAACTGAATAACACACTCATCG
CAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATT
CACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCT
AAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTTGGAG
CCAATCCTTCAATCAATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGAC
CCAAACATAGTGAAAGATCTTCAAAATAAGTTCATTAATGGCAATTAGGA
GAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGAGGCTGTA
TTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGAGGTC
TCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACATAATT
GTTATTGTTAAAAAAAAAAAAAAAAA
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