FC928991

Overview
NameFC928991
Unique NameFC928991
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12114 contig Ccv1_Contig12114:965..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928991 vs. ExPASy Swiss-Prot
Match: CDKA1_ARATH (Cyclin-dependent kinase A-1 OS=Arabidopsis thaliana GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.982e-24
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 229
            GTP EDTW GVTSLPD+KSAFPKW   +L T V NL+P G+DLLSKML MDP++RI AR+ALEHEYF+D+  +P
Sbjct:  221 GTPYEDTWRGVTSLPDYKSAFPKWKPTDLETFVPNLDPDGVDLLSKMLLMDPTKRINARAALEHEYFKDLGGMP 294          
BLAST of FC928991 vs. ExPASy Swiss-Prot
Match: CDK3_HUMAN (Cell division protein kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.456e-20
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP*YLLYML 250
            GTP+EDTWPGVT LPD+K +FPKW  K L  +V NLEP G DLL ++L  DPS+RITA++AL H YF   E  P    Y+L
Sbjct:  220 GTPSEDTWPGVTQLPDYKGSFPKWTRKGLEEIVPNLEPEGRDLLMQLLQYDPSQRITAKTALAHPYFSSPEPSPAARQYVL 300          
BLAST of FC928991 vs. ExPASy Swiss-Prot
Match: CDC2_CARAU (Cell division control protein 2 homolog OS=Carassius auratus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.433e-18
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTPN + WP V SLPD+K+ FPKW S  L + V+NL+  GIDLL+KML  DP +RI+AR A+ H YF D++
Sbjct:  221 GTPNNEVWPDVESLPDYKNTFPKWKSGNLASTVKNLDKNGIDLLTKMLIYDPPKRISARQAMTHPYFDDLD 291          
BLAST of FC928991 vs. ExPASy Swiss-Prot
Match: CDC2_ORYCU (Cell division control protein 2 homolog OS=Oryzias curvinotus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.193e-18
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTPN D WP V SLPD+KS FPKW    L ++V+NL+  G+DLL+KML  +P +RI+AR A+ H YF D++
Sbjct:  221 GTPNNDVWPDVESLPDYKSTFPKWKGGSLSSMVKNLDKNGLDLLAKMLIYNPPKRISAREAMTHPYFDDLD 291          
BLAST of FC928991 vs. ExPASy Swiss-Prot
Match: CDC2_CHICK (Cell division control protein 2 homolog OS=Gallus gallus GN=CDC2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.193e-18
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 2
Query:    2 ARGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            A GTPN D WP V SL D+K+ FPKW    LGT V+NL+  G+DLLSKML  DP++RI+ + AL H YF D++
Sbjct:  219 ALGTPNNDVWPDVESLQDYKNTFPKWKPGSLGTHVQNLDEDGLDLLSKMLIYDPAKRISGKMALNHPYFDDLD 291          
BLAST of FC928991 vs. ExPASy Swiss-Prot
Match: CDC2_ORYLU (Cell division control protein 2 homolog OS=Oryzias luzonensis GN=cdc2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.114e-18
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTPN D WP V SLPD+K+ FPKW    L ++V+NL+  G+DLL+KML  +P +RI+AR A+ H YF D++
Sbjct:  221 GTPNNDVWPDVESLPDYKNTFPKWKGGSLSSMVKNLDKNGLDLLAKMLIYNPPKRISAREAMTHPYFDDLD 291          
BLAST of FC928991 vs. ExPASy Swiss-Prot
Match: CDC2_ORYLA (Cell division control protein 2 homolog OS=Oryzias latipes GN=cdc2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.114e-18
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTPN D WP V SLPD+K+ FPKW    L ++V+NL+  G+DLL+KML  +P +RI+AR A+ H YF D++
Sbjct:  221 GTPNNDVWPDVESLPDYKNTFPKWKEGSLSSMVKNLDKNGLDLLAKMLIYNPPKRISAREAMTHPYFDDLD 291          
BLAST of FC928991 vs. ExPASy Swiss-Prot
Match: CDC2_ORYJA (Cell division control protein 2 homolog OS=Oryzias javanicus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.291e-18
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTPN D WP V SLPD+K+ FPKW    L ++V+NL+  G+DLL+KML  +P +RI+AR A+ H YF D++
Sbjct:  221 GTPNNDVWPDVESLPDYKNTFPKWMEGSLSSMVKNLDKNGLDLLAKMLIYNPPKRISAREAMTHPYFDDLD 291          
BLAST of FC928991 vs. ExPASy Swiss-Prot
Match: CDK2_CARAU (Cell division protein kinase 2 OS=Carassius auratus GN=cdk2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.585e-17
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTP+E  WPGVTS+PD+K +FPKW  ++L  VV  L+  G DLL +ML  DP++RI+A++AL H +FRDV
Sbjct:  220 GTPDESIWPGVTSMPDYKPSFPKWARQDLSKVVPPLDEDGRDLLGQMLIYDPNKRISAKNALVHRFFRDV 289          
BLAST of FC928991 vs. ExPASy Swiss-Prot
Match: CDC28_CANAL (Cell division control protein 28 OS=Candida albicans GN=CDC28 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.585e-17
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 214
            GTPNE+ WP V  LPDFKS+FP+W  K L   V +L+  GIDLL +ML  DPSRRI+A+ AL H YF D
Sbjct:  226 GTPNEEIWPDVNYLPDFKSSFPQWKKKPLSEAVPSLDANGIDLLDQMLVYDPSRRISAKRALIHPYFND 294          
The following BLAST results are available for this feature:
BLAST of FC928991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CDKA1_ARATH2.982e-2468.92Cyclin-dependent kinase A-1 OS=Arabidopsis thalian... [more]
CDK3_HUMAN4.456e-2058.02Cell division protein kinase 3 OS=Homo sapiens GN=... [more]
CDC2_CARAU1.433e-1856.34Cell division control protein 2 homolog OS=Carassi... [more]
CDC2_ORYCU3.193e-1854.93Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_CHICK3.193e-1856.16Cell division control protein 2 homolog OS=Gallus ... [more]
CDC2_ORYLU7.114e-1853.52Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_ORYLA7.114e-1853.52Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_ORYJA9.291e-1853.52Cell division control protein 2 homolog OS=Oryzias... [more]
CDK2_CARAU1.585e-1755.71Cell division protein kinase 2 OS=Carassius auratu... [more]
CDC28_CANAL1.585e-1759.42Cell division control protein 28 OS=Candida albica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3BF04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928991 ID=FC928991; Name=FC928991; organism=Citrus clementina; type=EST; length=535bp
GGCACGAGGAACACCTAATGAGGACACATGGCCTGGAGTGACTTCATTGC
CTGACTTTAAATCTGCCTTTCCTAAATGGCCTTCTAAGGAGTTGGGGACT
GTTGTTCGAAATCTTGAGCCAGCTGGCATTGATCTCCTTTCTAAAATGCT
CTGCATGGATCCAAGCAGAAGAATTACTGCCAGAAGTGCTCTAGAACATG
AATACTTCAGGGACGTCGAATTTGTACCCTAATATCTGTTGTATATGCTA
TTAGAGTGTTGACATTATTGTGAAGCCTTCGGTTTTGATTGTTTGCGAAA
TTTGCCGACTGTCTTTACTTGCAGTTTTACTGAAAAGTCTTACTACATGG
AATGGCTTTTTACAGTCATCTCTGGATTTGCCTAGTTTGTAATCGTGTAT
TCGCGGCTTTCTTGATCTTGTGGATAAATGTTTGTGCCAGTTTTTCTTTT
AATATTTGATATGTAATACACCAAATTGAATTTGTTGTTCGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top