FC928993

Overview
NameFC928993
Unique NameFC928993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9282 contig Ccv1_Contig9282:1..390. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_ANOFW (Putative N-acetyldiaminopimelate deacetylase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=dapL PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   52 LKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEVPK 390
            ++  ++ +FQPAEEG GGA  +LE+  +++   + I  LH+ P  P+G +A++ G L A +      + GKGGHAA P  + D ++AAS++I+ LQ +VSR  +PLDS V+ + K
Sbjct:  111 IRDDMLFIFQPAEEGPGGALPMLESDEMKQWMPDMILALHIAPAYPVGTIATKEGLLFANTSELFIDLIGKGGHAAFPHETKDMVVAASSLIMQLQTIVSRNVNPLDSAVITIGK 225          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LISMO (Putative N-acetyldiaminopimelate deacetylase OS=Listeria monocytogenes GN=dapL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.165e-18
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEV 384
            K  ++ VFQPAEEG GGA  ++E+      + ++I+GLH+ P   +GE+A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V+ +
Sbjct:  115 KDNLLFVFQPAEEGPGGAKPIMESTEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITI 226          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: HIPO_CAMJE (Hippurate hydrolase OS=Campylobacter jejuni GN=hipO PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.828e-18
Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    4 TMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKVNA--IFGLHVDPNLPIGEVAS---RPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEV 384
            T LL AAK L    +   G + L FQPAEEG GGA  ++E G+ EK ++  +FG H   N+P G       + G ++A S  +   + G+GGH + P+ + DPI AAS +IV+LQ +VSR  DP +S VV +
Sbjct:  108 TSLLLAAKYLAS--QNFNGALNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGWH---NMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLIVALQSIVSRNVDPQNSAVVSI 234          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LISW6 (Putative N-acetyldiaminopimelate deacetylase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dapL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.828e-18
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEV 384
            K  ++ VFQPAEEG GGA  ++E+      + + I+GLH+ P   +GE+A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V+ +
Sbjct:  115 KDNLLFVFQPAEEGPGGAKPIMESEEFAAWRPDTIYGLHIAPEYKVGEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITI 226          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LISIV (Putative N-acetyldiaminopimelate deacetylase OS=Listeria ivanovii GN=dapL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.828e-18
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEV 384
            K  ++ VFQPAEEG GGA  ++E+      + ++I+GLH+ P   +G++A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V+ +
Sbjct:  116 KDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGQIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITI 227          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LISIN (Putative N-acetyldiaminopimelate deacetylase OS=Listeria innocua GN=dapL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.828e-18
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEV 384
            K  ++ VFQPAEEG GGA  ++E+      + + I+GLH+ P   +G++A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V+ +
Sbjct:  115 KDNLLFVFQPAEEGPGGAKPIMESAEFSEWRPDTIYGLHIAPEYKVGQIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITI 226          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LEUMM (Putative N-acetyldiaminopimelate deacetylase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=dapL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.693e-18
Identity = 47/131 (35.88%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEV 384
            +++ LG  +   EH+   K  +++ FQPAEE   G    ++ G+ E     +  +G+H  PNLP G +++  G L AG+   E  I G+GGHAA P    DPI+ ++ +I+ LQ +VSR+ DP++  VV +
Sbjct:  105 MSLALGLVQYFSEHQP--KDNLIVFFQPAEESKSGGKLAVDLGIFEGEWHPDEFYGIHDQPNLPAGTLSTLAGTLFAGTAELEIDIHGQGGHAAYPHLGKDPIVISAELIMLLQTVVSRDVDPIEGGVVSL 233          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_BACHD (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus halodurans GN=dapL PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.227e-18
Identity = 49/130 (37.69%), Postives = 75/130 (57.69%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEV 384
            +T+  G  +    H+ E    ++ +FQPAEEG GGA  +L++        + I  LH+ P  P+G +A+R G L A +      + G+GGHAA P  + D ++AAS+++  LQ +VSR  DPLDS VV +
Sbjct:   99 MTIAFGLLRHFAYHQPETH--LLFIFQPAEEGPGGAKPMLDSEEFRMWWPDEIIALHIAPEYPVGTIATRKGLLFANTSELFIDLKGQGGHAAYPHLANDMVVAASHLVTQLQSVVSRNVDPLDSAVVTI 226          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: Y100_SYNY3 (Uncharacterized hydrolase sll0100 OS=Synechocystis sp. (strain PCC 6803) GN=sll0100 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.074e-17
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    4 TMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEV 384
            T+ LG A +L +    L G V  +FQPAEE   GA  +++ G ++ V+ I G+HV P++P  +V  R G L A +   E  I G+ GH A P  +ID I  A+ VI +LQ  +SR  +PL   V+ +
Sbjct:  109 TLGLGTAMVLSQMGHRLPGDVRFLFQPAEEIAQGASWMIQDGAMKGVSHILGVHVFPSIPAQQVGIRYGALTAAADDLEIFIQGESGHGARPHEAIDAIWIAAQVITALQQAISRTQNPLRPMVLSL 235          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LACLS (Putative N-acetyldiaminopimelate deacetylase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=dapL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.188e-16
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEVPK 390
            +T+ LG  + L E +   K  ++ +FQPAEE   G   + + G  +    +  +GLHV P+L +G++A+    L AG+   E    G GGHAA P  + D ++AA+  +  +Q +VSR  DPLDS VV   K
Sbjct:   99 MTVALGLLEKLSESQP--KNNLLFLFQPAEENEAGGKLMYDGGAFKNWLPDEFYGLHVRPDLKVGDIATNEQTLFAGTCEVELTFVGTGGHAAFPHTANDALVAAAYFVTQVQTIVSRNVDPLDSAVVTFGK 228          
The following BLAST results are available for this feature:
BLAST of FC928993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
DAPL_ANOFW1.269e-1840.00Putative N-acetyldiaminopimelate deacetylase OS=An... [more]
DAPL_LISMO2.165e-1840.18Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
HIPO_CAMJE2.828e-1841.67Hippurate hydrolase OS=Campylobacter jejuni GN=hip... [more]
DAPL_LISW62.828e-1840.18Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LISIV2.828e-1839.29Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LISIN2.828e-1839.29Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LEUMM3.693e-1835.88Putative N-acetyldiaminopimelate deacetylase OS=Le... [more]
DAPL_BACHD8.227e-1837.69Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
Y100_SYNY31.074e-1738.58Uncharacterized hydrolase sll0100 OS=Synechocystis... [more]
DAPL_LACLS1.188e-1636.36Putative N-acetyldiaminopimelate deacetylase OS=La... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928993 ID=FC928993; Name=FC928993; organism=Citrus clementina; type=EST; length=390bp
GTCACCATGCTTCTAGGTGCAGCAAAAATTCTTCAAGAGCACCGTGAGGA
GTTAAAGGGTACAGTTGTTCTGGTTTTCCAACCAGCCGAAGAAGGAGGTG
GAGGAGCCCACAAAGTGCTCGAAGCAGGAGTCCTGGAAAAAGTTAATGCC
ATATTTGGGTTACATGTCGACCCTAACTTACCCATAGGTGAAGTAGCTTC
AAGACCTGGTCCTCTGTTAGCTGGGAGTGGCTTCTTTGAAGCAGTAATAN
GTGGAAAAGGAGGTCATGCGGCCATTCCTCAGCATTCAATAGATCCAATA
TTGGCAGCTTCTAATGTGATTGTTAGTTTACAACATCTTGTTTCTCGTGA
AGCTGATCCACTTGATTCACAGGTCGTGGAAGTTCCAAAA
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