FC928993

Overview
NameFC928993
Unique NameFC928993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9282 contig Ccv1_Contig9282:1..390. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LACLM (Putative N-acetyldiaminopimelate deacetylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=dapL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.188e-16
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEVPK 390
            +T+ LG  + L E +   K  ++ +FQPAEE   G   + + G  +    +  +GLHV P+L +G++A+    L AG+   E    G GGHAA P  + D ++AA+  +  +Q +VSR  DPLDS VV   K
Sbjct:   99 MTVALGLLEKLSESQP--KNNLLFLFQPAEENEAGGKLMYDGGAFKNWLPDEFYGLHVRPDLKVGDIATNEQTLFAGTCEVELTFVGTGGHAAFPHTANDALVAAAYFVTQVQTIVSRNVDPLDSAVVTFGK 228          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LACS1 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=dapL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.552e-16
Identity = 46/128 (35.94%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVV 378
            +T+ LG       HR   K  +  +FQPAEE   G  K+ ++G L++   + I+ LH +P LP G +  R G L AG+        GK GHAA P  + D ++A +  +  +Q +VSR  DP+ S VV
Sbjct:  102 MTVALGVLSYFASHRP--KYNMTFIFQPAEENASGGMKLYQSGELDEWMPDEIYALHDNPQLPAGTIGCRKGTLFAGTCEIHVKFIGKSGHAAYPHQANDMVVAGAQFVNQIQTIVSRNVDPIQSVVV 227          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LACPL (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus plantarum GN=dapL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.552e-16
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVV 378
            +++ LG      E+R      +V +FQPAEE   G  ++ E+G L+     + IF  H +PNLP G +  R G L AG+    A + GK GHAA P  + D ++A + ++  LQ +V+R  DP+ S VV
Sbjct:  105 MSVALGILSYFAENRPATD--MVFMFQPAEENASGGQRLYESGALDGDWMPDEIFAFHDNPNLPTGAIGCRMGTLFAGTCEIHAHLSGKSGHAAYPHQANDMVVAGAALVSQLQTIVARNVDPIQSGVV 231          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LACCB (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus casei (strain BL23) GN=dapL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.026e-16
Identity = 46/129 (35.66%), Postives = 71/129 (55.04%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVV 378
            +T+ LG      EH+   K  ++  FQPAEE   G     + G       ++  +GLH  P+LP G +++R G L AG+      + GK GHAA+PQ++ D I+AA++ I  +Q +V+R   P DS V+
Sbjct:  103 MTVALGILSYFAEHQP--KDNLIFFFQPAEESKNGGKLAYDMGAFTGDWHIDEFYGLHDRPDLPAGTISTRLGTLFAGTTEINVDLIGKSGHAALPQNANDMIVAAASFISQIQTVVARNVGPTDSAVI 229          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LACC3 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus casei (strain ATCC 334) GN=dapL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.026e-16
Identity = 46/129 (35.66%), Postives = 71/129 (55.04%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVV 378
            +T+ LG      EH+   K  ++  FQPAEE   G     + G       ++  +GLH  P+LP G +++R G L AG+      + GK GHAA+PQ++ D I+AA++ I  +Q +V+R   P DS V+
Sbjct:  103 MTVALGILSYFAEHQP--KDNLIFFFQPAEESKNGGKLAYDMGAFTGDWHIDEFYGLHDRPDLPAGTISTRLGTLFAGTTEINVDLIGKSGHAALPQNANDMIVAAASFISQIQTVVARNVGPTDSAVI 229          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_PEDPA (Putative N-acetyldiaminopimelate deacetylase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dapL PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.313e-15
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEVPK 390
            +T+ LG  +    H+ +    ++  FQPAEE   G+ +   A +     + N  +GLH  P LP G +  R G L AG+      + GKGGHAA PQ + D ++A + +I  LQ +V+R  +P++  V+ + K
Sbjct:  105 MTVALGILEYFANHQPQ--DNLIFFFQPAEESHSGSVRAFNANIFTNQFRPNEFYGLHSTPTLPAGVIGCRMGTLFAGTTEVNLKLTGKGGHAAYPQDANDMVVAQAYLITQLQTIVARNVNPIEGGVLTLGK 235          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_LACF3 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dapL PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.313e-15
Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVEVPK 390
            +T+ LG       H+   K  ++  FQPAEE   G  +  E G+ E   + +  +GLH +P L  G +  R G L AG+   +  + GK GHAA PQ + D ++AA+ +I+ +Q ++SR  +P+++ V+ + K
Sbjct:  104 MTVALGVLDYFASHQP--KDNLLFFFQPAEESEAGGQRAYELGLFEGKWRPDEFYGLHDNPALKTGVIGCRLGTLFAGTTEVDIDVLGKDGHAAFPQEANDAVVAAAALIMQVQTIISRSINPVEAGVITLGK 234          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_STRZT (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=dapL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.240e-15
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVV 378
            +T+ LG  +   E  E+ K  ++ +FQPAEE   G   + EAG       +  +GLHV P+L +G++A+    L AG+   +    GKGGHAA P  + D ++AAS  +  +Q +VSR  +P++  VV
Sbjct:  100 MTIALGCLERALE--EQPKNNLLFLFQPAEENEAGGMLMYEAGAFGDWLPDQFYGLHVRPDLKVGQIATNTHTLFAGTCEVKIRFKGKGGHAAFPHEANDALVAASYFVTQVQSVVSRNVNPIEGAVV 225          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_STRGC (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=dapL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.240e-15
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   64 VVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVV 378
            ++ +FQPAEE   G   + E G       +  +GLHV P+L +G++A+  G L AG+   +    GKGGHAA P  + D ++AAS  I  +Q +VSR  DP++  VV
Sbjct:  119 LLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDLKVGDIATNRGTLFAGTCEVKLTFKGKGGHAAFPHEANDALIAASYFITQVQTIVSRNVDPIEGAVV 225          
BLAST of FC928993 vs. ExPASy Swiss-Prot
Match: DAPL_STRSV (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus sanguinis (strain SK36) GN=dapL PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.926e-15
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   64 VVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIXGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVV 378
            ++ +FQPAEE   G   + E G       +  +GLHV P+L +G++A+  G L AG+   +    GKGGHAA P  + D ++AAS  I  +Q +VSR  DP++  VV
Sbjct:  119 LLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDLKVGDIATNRGTLFAGTCEVKLTFKGKGGHAAFPHEANDALVAASYFITQVQTIVSRNVDPIEGAVV 225          
The following BLAST results are available for this feature:
BLAST of FC928993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
DAPL_LACLM1.188e-1636.36Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACS11.552e-1635.94Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACPL1.552e-1636.43Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACCB2.026e-1635.66Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACC32.026e-1635.66Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_PEDPA1.313e-1533.08Putative N-acetyldiaminopimelate deacetylase OS=Pe... [more]
DAPL_LACF31.313e-1533.08Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_STRZT2.240e-1535.94Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRGC2.240e-1539.25Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRSV2.926e-1539.25Putative N-acetyldiaminopimelate deacetylase OS=St... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928993 ID=FC928993; Name=FC928993; organism=Citrus clementina; type=EST; length=390bp
GTCACCATGCTTCTAGGTGCAGCAAAAATTCTTCAAGAGCACCGTGAGGA
GTTAAAGGGTACAGTTGTTCTGGTTTTCCAACCAGCCGAAGAAGGAGGTG
GAGGAGCCCACAAAGTGCTCGAAGCAGGAGTCCTGGAAAAAGTTAATGCC
ATATTTGGGTTACATGTCGACCCTAACTTACCCATAGGTGAAGTAGCTTC
AAGACCTGGTCCTCTGTTAGCTGGGAGTGGCTTCTTTGAAGCAGTAATAN
GTGGAAAAGGAGGTCATGCGGCCATTCCTCAGCATTCAATAGATCCAATA
TTGGCAGCTTCTAATGTGATTGTTAGTTTACAACATCTTGTTTCTCGTGA
AGCTGATCCACTTGATTCACAGGTCGTGGAAGTTCCAAAA
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