FC928997

Overview
NameFC928997
Unique NameFC928997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928997_ssr496 microsatellite FC928997_ssr496:496..505. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6637 contig Ccv1_Contig6637:54..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.722e-44
Identity = 91/156 (58.33%), Postives = 118/156 (75.64%), Query Frame = 2
Query:   23 MGLDSSPLFSTLQHMMEMGADDSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 487
            M L   P+ S L+ M+E+  +D  + K+ N P+R Y+RDAKAMAATPADV E+PN+Y F+VDMPG+K  +IKVQVE+DNVL++SGER+RE +E +G KYVRMERR+GKFMRKF LPENA+++ ISAVC DGVL VTV            TI+V++A
Sbjct:    1 MDLGRFPIISILEDMLEV-PEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQVA 155          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.496e-40
Identity = 82/150 (54.67%), Postives = 114/150 (76.00%), Query Frame = 2
Query:   41 PLFSTLQHMMEMGADDSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 487
            P+FS L+ M+E  A +    K+ N P+R Y+RDAKAMAATPADV E+P++YVF VDMPG+K  +I+VQ+E++NVL++SG+R+R+ +E +G K+VRMERR+GKFMRKF LP+NA++E ISA C DGVL VT+            TI+V++A
Sbjct:    9 PIFSILEDMLE--APEEQTEKTRNNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPKLPPPEPKKPKTIQVQVA 156          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.049e-31
Identity = 76/168 (45.24%), Postives = 107/168 (63.69%), Query Frame = 2
Query:    8 MDFRIMGLDSSPLFST-LQHMMEMGADDSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNS--YVFIVDMPGLKSGDIKVQVEDDNVLLISGERKR-----EEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 487
            M+  ++G    PL +  +Q ++++   D  + +  N PTR YVRD +AMA TP DVKE   S   V  VDMPG+   D++V+VED NVL ISGER+R     ++  +G KY+RMERR+GKFMR+F LPE+A+++ + A  +DGVLTVTVD            +EVK+A
Sbjct:    1 MELSVVG--GEPLLAVAMQQLLDLDLPDELE-RQLNPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRVVEVKVA 165          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   98 NKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            N  S+A    + R+  A  +T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  GKFMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   34 NTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTV 144          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 52/109 (47.71%), Postives = 77/109 (70.64%), Query Frame = 2
Query:  104 SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            S+++P+ ++ R+  A  +T  D KE P ++VF  D+PGLK  ++KV+VEDD VL ISGER  E+E    ++ R+ER  GKF+R+F LPENA ++ + A  ++GVLTVTV
Sbjct:   33 SNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTV 141          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22
Identity = 54/109 (49.54%), Postives = 70/109 (64.22%), Query Frame = 2
Query:  104 SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            SS     +  RD  A      D KE P ++VF  D+PGLK  ++KV+VED NVL ISGER +E E+   K+ R+ER  GKFMR+F LPENA +E + A  ++GVLTV V
Sbjct:   34 SSALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVV 142          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.920e-22
Identity = 50/109 (45.87%), Postives = 76/109 (69.72%), Query Frame = 2
Query:  104 SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            +++A + ++ R+  A  +T  D KE P ++VF  D+PG+K  ++KV++EDD VL ISGER  E+E    ++ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   33 NNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTV 141          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  137 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            ++ A A T  D KE P  +VF VD+PGLK  ++KV+VE+D VL ISGER  E+E    K+ RMER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 51/99 (51.52%), Postives = 70/99 (70.71%), Query Frame = 2
Query:  134 RDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            RD  A A    D KE P S+VF  D+PG+K  ++KV+VE+ NVL+ISG+R +E+E    K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   34 RDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTV 132          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.595e-21
Identity = 50/102 (49.02%), Postives = 76/102 (74.51%), Query Frame = 2
Query:  134 RDAKAMAATPA--DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 433
            +D  +MA +PA  D KE P  +V ++D+PGLK  +IKV+VE++ VL +SGERK+EEEK G  + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+D
Sbjct:   57 KDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLD 158          
The following BLAST results are available for this feature:
BLAST of FC928997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS176_ARATH3.722e-4458.3317.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS177_ARATH2.496e-4054.6717.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ8.049e-3145.2419.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP16_SOYBN1.797e-2250.4518.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA1.797e-2247.7118.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS181_ARATH5.229e-2249.5418.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_MEDSA8.920e-2245.8718.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_SOLLC1.522e-2154.0817.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS16C_ORYSJ1.522e-2151.5216.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP41_SOYBN2.595e-2149.0222.0 kDa class IV heat shock protein OS=Glycine ma... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BG02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928997 ID=FC928997; Name=FC928997; organism=Citrus clementina; type=EST; length=740bp
CAAAAGAATGGATTTCAGAATCATGGGTTTGGACTCATCGCCACTCTTTT
CAACTCTGCAGCACATGATGGAGATGGGGGCGGACGACTCCGCTGACAAC
AAGTCATCCAACGCGCCGACGCGCACGTACGTGAGAGACGCCAAGGCAAT
GGCGGCGACGCCTGCGGACGTGAAGGAGTATCCGAACTCGTACGTGTTCA
TCGTCGATATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGTGGAG
GACGACAATGTGCTGCTCATAAGCGGTGAGAGGAAGCGGGAGGAGGAGAA
AGATGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTTGGCAAGTTTATGA
GGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGCGGTG
TGTCAGGACGGAGTGTTGACTGTGACTGTCGATAAGCTGCCACCGCCGGA
GCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAACTTTGAGAG
AGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTATTTGCCGGTTG
TTATGAATAATTTTGCTTGTGGGTTTGACGGTACTATGCCTCTGTAATCT
CCTCTTCCTTTTTCTTTTTTTCTCTTTCTTCCCTTTTTTGTCCAAAATTC
TCTCTGTTCACTGGTTTGTGGTTCGGTCTTTGGCATTCCGGAAGGGAAGC
TGACGGCCGTCTACTGGTAGACATCTAGTTGTTATAATTA
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