FC928997

Overview
NameFC928997
Unique NameFC928997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928997_ssr496 microsatellite FC928997_ssr496:496..505. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6637 contig Ccv1_Contig6637:54..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 41/101 (40.59%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  140 AKAMAATPA----DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            A A A  P+    D KE   ++VF+ DMPG++  +++V+VE++ VL ISG+R R  E+ G ++ R+ER   +F+R   LP NAN + + A   +GVLT+T+
Sbjct:   60 AAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITI 160          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 40/100 (40.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  137 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKD----GAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTV 424
            D   ++    D +E  +++  +VD+PG++  D++V+VED+ VL ISGER+REE  +    G  + R ER  G+F R+  LP+NA++++I+A   +GVLTV
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 2
Query:  137 DAKAMAATPADVKEYPNSYVFIVDMP-GLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            D  A A T  + +E   +YVF  D+P G+K  +++V+V++ NVL+I+GER    E+ G +   +ER    F  +F LP++A V+ + A    G+LTVTV
Sbjct:   34 DTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVTV 132          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  167 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRV-----GKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            D  E  NS++F +++PG    DIKVQ+E+ NVL I GE  +EE+K+   +   ER        +F+R+  LPEN  V+ + A  ++GVLTV V
Sbjct:   25 DWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTVVV 117          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = 2
Query:  140 AKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISG-------ERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            A A A    D  E P S+V  +++PGL   D+KVQVED NVL + G       E++RE EKD   +V  ER   +F R+  LP    VE I A   +GVLTV V
Sbjct:   24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHV-AERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVV 126          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS22C_CHLRE (Heat shock 22 kDa protein, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  161 PADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREE--EKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            P D+ E P ++    D PG+   D+KV++++  VL+++GERK     ++ G K  R ER    F R F LPENAN + I+A    GVL VTV
Sbjct:   48 PMDIIESPTAFELHADAPGMGPDDVKVELQE-GVLMVTGERKLSHTTKEAGGKVWRSERTAYSFSRAFSLPENANPDGITAAMDKGVLVVTV 138          
The following BLAST results are available for this feature:
BLAST of FC928997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS189_ORYSJ6.192e-1540.5918.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ5.242e-1440.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ6.407e-1238.3817.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS157_ARATH8.368e-1240.8615.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP16_ORYSJ1.093e-1143.2716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS22C_CHLRE4.153e-1141.30Heat shock 22 kDa protein, chloroplastic OS=Chlamy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3BG02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928997 ID=FC928997; Name=FC928997; organism=Citrus clementina; type=EST; length=740bp
CAAAAGAATGGATTTCAGAATCATGGGTTTGGACTCATCGCCACTCTTTT
CAACTCTGCAGCACATGATGGAGATGGGGGCGGACGACTCCGCTGACAAC
AAGTCATCCAACGCGCCGACGCGCACGTACGTGAGAGACGCCAAGGCAAT
GGCGGCGACGCCTGCGGACGTGAAGGAGTATCCGAACTCGTACGTGTTCA
TCGTCGATATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGTGGAG
GACGACAATGTGCTGCTCATAAGCGGTGAGAGGAAGCGGGAGGAGGAGAA
AGATGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTTGGCAAGTTTATGA
GGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGCGGTG
TGTCAGGACGGAGTGTTGACTGTGACTGTCGATAAGCTGCCACCGCCGGA
GCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAACTTTGAGAG
AGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTATTTGCCGGTTG
TTATGAATAATTTTGCTTGTGGGTTTGACGGTACTATGCCTCTGTAATCT
CCTCTTCCTTTTTCTTTTTTTCTCTTTCTTCCCTTTTTTGTCCAAAATTC
TCTCTGTTCACTGGTTTGTGGTTCGGTCTTTGGCATTCCGGAAGGGAAGC
TGACGGCCGTCTACTGGTAGACATCTAGTTGTTATAATTA
back to top