FC928999

Overview
NameFC928999
Unique NameFC928999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9282 contig Ccv1_Contig9282:1..377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_GEOKA (Putative N-acetyldiaminopimelate deacetylase OS=Geobacillus kaustophilus GN=dapL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   52 LKGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            LK  ++ VFQPAEEG GGA  +LE+ ++   K + I  LH+ P  P+G +A++ G L A +      + GKGGHAA P  + D ++AA  ++  LQ +V+R  DPLDS V
Sbjct:  116 LKDDLLFVFQPAEEGPGGAKPMLESDIMREWKPDIIVALHIAPEYPVGTIATKEGLLFANTSELFIDLKGKGGHAAFPHLANDMVVAACALVTQLQSIVARNVDPLDSAV 225          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_STRU0 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=dapL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            +TM LG  + L E  ++ K  ++ +FQPAEE   G   + ++G L++   + ++ LHV P+LP+G +AS    L AG+   +    GKGGHAA P H+ D ++AAS  +  +Q +VSR  DP++  V
Sbjct:  100 MTMALGLLEALVE--KQSKHNMLFIFQPAEENEAGGMLMYQSGALDEWMPDEVYALHVRPDLPVGTLASNRATLFAGTCEVKVSFKGKGGHAAFPHHANDALVAASYFVTQVQTIVSRNVDPIEGAV 224          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_OENOB (Putative N-acetyldiaminopimelate deacetylase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=dapL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKV---NAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            +T+ LG      +H+   K  +++ FQPAEE   G  +  +AG  +     +  + LHV+P LP G++ASR G L AGS        GK GHAA PQ++ D I+AA+N + ++Q +VSR  DP++  V
Sbjct:  104 MTVALGILSYFAKHQP--KDNLLVFFQPAEENEFGGKRFYDAGGFQGEYLPDEFYALHVNPQLPAGQIASRKGTLFAGSNELRISFIGKSGHAAYPQNAKDSIVAAANFVTNVQTVVSRNVDPIEGGV 229          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LISMH (Putative N-acetyldiaminopimelate deacetylase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dapL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            K  ++ VFQPAEEG GGA  ++E+      + ++I+GLH+ P   +GE+A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V
Sbjct:  115 KDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAV 223          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LISMF (Putative N-acetyldiaminopimelate deacetylase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dapL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            K  ++ VFQPAEEG GGA  ++E+      + ++I+GLH+ P   +GE+A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V
Sbjct:  115 KDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAV 223          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LISMC (Putative N-acetyldiaminopimelate deacetylase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=dapL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            K  ++ VFQPAEEG GGA  ++E+      + ++I+GLH+ P   +GE+A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V
Sbjct:  115 KDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAV 223          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LISMO (Putative N-acetyldiaminopimelate deacetylase OS=Listeria monocytogenes GN=dapL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            K  ++ VFQPAEEG GGA  ++E+      + ++I+GLH+ P   +GE+A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V
Sbjct:  115 KDNLLFVFQPAEEGPGGAKPIMESTEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAV 223          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LEUCK (Putative N-acetyldiaminopimelate deacetylase OS=Leuconostoc citreum (strain KM20) GN=dapL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPL 363
            +TM LG A+   +H+   K  +++ FQPAEE   G     + G+ E   + +  +G+H  PNLP G +++  G L AG+   +  + G GGHAA P  + DPI+ A+ +I+ LQ +VSR  DP+
Sbjct:  106 MTMALGLAQYFSQHQP--KDNLIIFFQPAEEAESGGKVAYDMGLFEGKWRPDEFYGIHDQPNLPAGTLSTLAGTLFAGTAELKVDVIGTGGHAAYPHLAKDPIVIAAELIIQLQTVVSRSVDPI 227          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LACAC (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus acidophilus GN=dapL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            +T+ LG      E++   K  ++  FQPAEE   G  +  E G+ +   K +  +GLH +P LP G +  R G L AG+      + GK GHAA PQ++ D ++AA+N+I+ +Q ++SR  DP+ S V
Sbjct:  106 MTVALGLLSYFSENQP--KDNLLFFFQPAEESESGGKQAYEKGLFQGKFKPDEFYGLHDNPELPAGSIGCRMGTLFAGTTEINIDVIGKSGHAAFPQNANDTVVAAANLIMQIQTIISRSIDPIQSGV 231          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_GEOTN (Putative N-acetyldiaminopimelate deacetylase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dapL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   52 LKGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            ++  ++ +FQPAEEG GGA  +LE+ ++   K + I  LH+ P  P+G +A++ G L A +      + GKGGHAA P  + D ++AA  ++  LQ +V+R  DPLDS V
Sbjct:  116 IRDDLLFIFQPAEEGPGGAKPMLESDIMREWKPDMIVALHIAPEYPVGTIATKEGLLFANTSELFIDLKGKGGHAAFPHLANDMVVAACALVTQLQSIVARNVDPLDSAV 225          
The following BLAST results are available for this feature:
BLAST of FC928999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
DAPL_GEOKA2.207e-1842.73Putative N-acetyldiaminopimelate deacetylase OS=Ge... [more]
DAPL_STRU02.883e-1837.80Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_OENOB6.422e-1838.28Putative N-acetyldiaminopimelate deacetylase OS=Oe... [more]
DAPL_LISMH6.422e-1841.28Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LISMF6.422e-1841.28Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LISMC6.422e-1841.28Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LISMO1.095e-1741.28Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LEUCK1.095e-1737.10Putative N-acetyldiaminopimelate deacetylase OS=Le... [more]
DAPL_LACAC1.095e-1736.72Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_GEOTN1.095e-1740.00Putative N-acetyldiaminopimelate deacetylase OS=Ge... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BG06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928999 ID=FC928999; Name=FC928999; organism=Citrus clementina; type=EST; length=377bp
GTCACCATGCTTCTAGGTGCAGCAAAAATTCTTCAAGAGCACCGTGAGGA
GTTAAAGGGTACAGTTGTTCTGGTTTTCCAACCAGCCGAAGAAGGAGGTG
GAGGAGCCCACAAAGTGCTCGAAGCAGGAGTCCTGGAAAAAGTTAATGCC
ATATTTGGGTTACATGTCGACCCTAACTTACCCATAGGTGAAGTAGCTTC
AAGACCTGGTCCTCTGTTAGCTGGGAGTGGCTTCTTTGAAGCAGTAATAG
GTGGAAAAGGAGGTCATGCGGCCATTCCTCAGCATTCAATAGATCCAATA
TTGGCAGCTTCTAATGTGATTGTTAGTTTACAACATCTTGTTTCTCGTGA
AGCTGATCCACTTGATTCACAGGTCGT
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