FC928999

Overview
NameFC928999
Unique NameFC928999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9282 contig Ccv1_Contig9282:1..377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LISW6 (Putative N-acetyldiaminopimelate deacetylase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dapL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            K  ++ VFQPAEEG GGA  ++E+      + + I+GLH+ P   +GE+A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V
Sbjct:  115 KDNLLFVFQPAEEGPGGAKPIMESEEFAAWRPDTIYGLHIAPEYKVGEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAV 223          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LISIV (Putative N-acetyldiaminopimelate deacetylase OS=Listeria ivanovii GN=dapL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            K  ++ VFQPAEEG GGA  ++E+      + ++I+GLH+ P   +G++A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V
Sbjct:  116 KDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGQIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAV 224          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LISIN (Putative N-acetyldiaminopimelate deacetylase OS=Listeria innocua GN=dapL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   55 KGTVVLVFQPAEEGGGGAHKVLEAGVLE--KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            K  ++ VFQPAEEG GGA  ++E+      + + I+GLH+ P   +G++A +PG L A +        GKGGHAA P  + D ++AAS  +  +Q ++SR  DP+DS V
Sbjct:  115 KDNLLFVFQPAEEGPGGAKPIMESAEFSEWRPDTIYGLHIAPEYKVGQIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAV 223          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LACH4 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus helveticus (strain DPC 4571) GN=dapL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            +++ LG      E++   K  ++  FQPAEE   G  K  E G+ E   + +  +GLH +P LP G +  R G L AG+      + GKGGHAA PQ++ D ++AA+++I+ +Q ++SR  DP+ S V
Sbjct:  106 MSVALGLLSYFSENQP--KDNLLFFFQPAEESESGGKKAYEDGIFEGKFRPDEFYGLHDNPELPAGAIGCREGTLFAGTTEVNIDLIGKGGHAAFPQNANDTVVAAASLIMQIQTVISRSIDPIQSGV 231          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LEUMM (Putative N-acetyldiaminopimelate deacetylase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.869e-17
Identity = 46/128 (35.94%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            +++ LG  +   EH+   K  +++ FQPAEE   G    ++ G+ E     +  +G+H  PNLP G +++  G L AG+   E  I G+GGHAA P    DPI+ ++ +I+ LQ +VSR+ DP++  V
Sbjct:  105 MSLALGLVQYFSEHQP--KDNLIVFFQPAEESKSGGKLAVDLGIFEGEWHPDEFYGIHDQPNLPAGTLSTLAGTLFAGTAELEIDIHGQGGHAAYPHLGKDPIVISAELIMLLQTVVSRDVDPIEGGV 230          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: Y100_SYNY3 (Uncharacterized hydrolase sll0100 OS=Synechocystis sp. (strain PCC 6803) GN=sll0100 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.440e-17
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    4 TMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            T+ LG A +L +    L G V  +FQPAEE   GA  +++ G ++ V+ I G+HV P++P  +V  R G L A +   E  I G+ GH A P  +ID I  A+ VI +LQ  +SR  +PL   V
Sbjct:  109 TLGLGTAMVLSQMGHRLPGDVRFLFQPAEEIAQGASWMIQDGAMKGVSHILGVHVFPSIPAQQVGIRYGALTAAADDLEIFIQGESGHGARPHEAIDAIWIAAQVITALQQAISRTQNPLRPMV 232          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_ANOFW (Putative N-acetyldiaminopimelate deacetylase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=dapL PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.440e-17
Identity = 45/110 (40.91%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   52 LKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            ++  ++ +FQPAEEG GGA  +LE+  +++   + I  LH+ P  P+G +A++ G L A +      + GKGGHAA P  + D ++AAS++I+ LQ +VSR  +PLDS V
Sbjct:  111 IRDDMLFIFQPAEEGPGGALPMLESDEMKQWMPDMILALHIAPAYPVGTIATKEGLLFANTSELFIDLIGKGGHAAFPHETKDMVVAASSLIMQLQTIVSRNVNPLDSAV 220          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: HIPO_CAMJE (Hippurate hydrolase OS=Campylobacter jejuni GN=hipO PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-17
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    4 TMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKVNA--IFGLHVDPNLPIGEVAS---RPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            T LL AAK L    +   G + L FQPAEEG GGA  ++E G+ EK ++  +FG H   N+P G       + G ++A S  +   + G+GGH + P+ + DPI AAS +IV+LQ +VSR  DP +S V
Sbjct:  108 TSLLLAAKYLAS--QNFNGALNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGWH---NMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLIVALQSIVSRNVDPQNSAV 231          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_BACHD (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus halodurans GN=dapL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.437e-17
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEK--VNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            +T+  G  +    H+ E    ++ +FQPAEEG GGA  +L++        + I  LH+ P  P+G +A+R G L A +      + G+GGHAA P  + D ++AAS+++  LQ +VSR  DPLDS V
Sbjct:   99 MTIAFGLLRHFAYHQPETH--LLFIFQPAEEGPGGAKPMLDSEEFRMWWPDEIIALHIAPEYPVGTIATRKGLLFANTSELFIDLKGQGGHAAYPHLANDMVVAASHLVTQLQSVVSRNVDPLDSAV 223          
BLAST of FC928999 vs. ExPASy Swiss-Prot
Match: DAPL_LACPL (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus plantarum GN=dapL PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 1
Query:    1 VTMLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLE---KVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQV 375
            +++ LG      E+R      +V +FQPAEE   G  ++ E+G L+     + IF  H +PNLP G +  R G L AG+    A + GK GHAA P  + D ++A + ++  LQ +V+R  DP+ S V
Sbjct:  105 MSVALGILSYFAENRPATD--MVFMFQPAEENASGGQRLYESGALDGDWMPDEIFAFHDNPNLPTGAIGCRMGTLFAGTCEIHAHLSGKSGHAAYPHQANDMVVAGAALVSQLQTIVARNVDPIQSGV 230          
The following BLAST results are available for this feature:
BLAST of FC928999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
DAPL_LISW61.431e-1741.28Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LISIV1.431e-1740.37Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LISIN1.431e-1740.37Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LACH41.431e-1736.72Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LEUMM1.869e-1735.94Putative N-acetyldiaminopimelate deacetylase OS=Le... [more]
Y100_SYNY32.440e-1739.52Uncharacterized hydrolase sll0100 OS=Synechocystis... [more]
DAPL_ANOFW2.440e-1740.91Putative N-acetyldiaminopimelate deacetylase OS=An... [more]
HIPO_CAMJE4.163e-1741.86Hippurate hydrolase OS=Campylobacter jejuni GN=hip... [more]
DAPL_BACHD5.437e-1737.80Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_LACPL3.524e-1635.94Putative N-acetyldiaminopimelate deacetylase OS=La... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3BG06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928999 ID=FC928999; Name=FC928999; organism=Citrus clementina; type=EST; length=377bp
GTCACCATGCTTCTAGGTGCAGCAAAAATTCTTCAAGAGCACCGTGAGGA
GTTAAAGGGTACAGTTGTTCTGGTTTTCCAACCAGCCGAAGAAGGAGGTG
GAGGAGCCCACAAAGTGCTCGAAGCAGGAGTCCTGGAAAAAGTTAATGCC
ATATTTGGGTTACATGTCGACCCTAACTTACCCATAGGTGAAGTAGCTTC
AAGACCTGGTCCTCTGTTAGCTGGGAGTGGCTTCTTTGAAGCAGTAATAG
GTGGAAAAGGAGGTCATGCGGCCATTCCTCAGCATTCAATAGATCCAATA
TTGGCAGCTTCTAATGTGATTGTTAGTTTACAACATCTTGTTTCTCGTGA
AGCTGATCCACTTGATTCACAGGTCGT
back to top