FC929004

Overview
NameFC929004
Unique NameFC929004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROYA (60S ribosomal protein L32 OS=Drosophila yakuba GN=RpL32 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.647e-38
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = -3 
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL V +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROSI (60S ribosomal protein L32 OS=Drosophila simulans GN=RpL32 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.647e-38
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = -3 
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL V +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROME (60S ribosomal protein L32 OS=Drosophila melanogaster GN=RpL32 PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.647e-38
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = -3 
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL V +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROAC (60S ribosomal protein L32 OS=Drosophila acanthoptera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.514e-38
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = -3 
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+ KRKEIVER  QL V +TN  ARLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNREYCGEIAHGVSSNKRKEIVERAKQLSVRLTNPNARLRSQENE 134
[Close]
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROPS (60S ribosomal protein L32 OS=Drosophila pseudoobscura pseudoobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = -3 
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL + +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROPE (60S ribosomal protein L32 OS=Drosophila persimilis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = -3 
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL + +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROMI (60S ribosomal protein L32 OS=Drosophila miranda GN=RpL32 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = -3 
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL + +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROAZ (60S ribosomal protein L32 OS=Drosophila azteca GN=RpL32 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = -3 
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL + +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROAI (60S ribosomal protein L32 OS=Drosophila affinis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = -3 
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL + +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROSU (60S ribosomal protein L32 OS=Drosophila subobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = -3 
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL + +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
The following BLAST results are available for this feature:
BLAST of FC929004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RL32_DROYA2.647e-3868.7560S ribosomal protein L32 OS=Drosophila yakuba GN=... [more]
RL32_DROSI2.647e-3868.7560S ribosomal protein L32 OS=Drosophila simulans G... [more]
RL32_DROME2.647e-3868.7560S ribosomal protein L32 OS=Drosophila melanogast... [more]
RL32_DROAC4.514e-3868.7560S ribosomal protein L32 OS=Drosophila acanthopte... [more]
RL32_DROPS5.896e-3867.8660S ribosomal protein L32 OS=Drosophila pseudoobsc... [more]
RL32_DROPE5.896e-3867.8660S ribosomal protein L32 OS=Drosophila persimilis... [more]
RL32_DROMI5.896e-3867.8660S ribosomal protein L32 OS=Drosophila miranda GN... [more]
RL32_DROAZ5.896e-3867.8660S ribosomal protein L32 OS=Drosophila azteca GN=... [more]
RL32_DROAI5.896e-3867.8660S ribosomal protein L32 OS=Drosophila affinis GN... [more]
RL32_DROSU7.700e-3867.8660S ribosomal protein L32 OS=Drosophila subobscura... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BG12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929004 ID=FC929004; Name=FC929004; organism=Citrus clementina; type=EST; length=684bp
TTTTTTTTTTTTTTTTTATGGCATAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAACTTGACATAACATTAATCATGCTCCACAA
AAGACAACAAATTCAAAATATCATTCAGGTGACAAATACAAAATACGTCA
CAATTCACCCCTGGAAATGTTCATCCATTCCAAAAACAACCTAGGAAACA
TTTGGCCAAAAGCCAACACTAACACAAAATATAGAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACAACCA
ATTGTGCACCACGCTCGACAATCTCCTTTCTCTTCTTGGTGGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAATAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAAATAGT
GGCGTGTTTTCTTGTCCGAGCCGTAACCAATATTGGGCATCAAAACACAT
CCTTTGAACTTTCTCCTGACACGTCAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACCCTGGGGCCTCTTGAACTTCT
TGAAACGCTTCTTCACTATCTTCTTGGTCAGCAAACGAACAGCCATTTTT
TCTAAAACGATGAACCGCGGGCTAACTGCCCCCA
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