FC929004

Overview
NameFC929004
Unique NameFC929004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROMD (60S ribosomal protein L32 OS=Drosophila madeirensis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL + +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROGU (60S ribosomal protein L32 OS=Drosophila guanche GN=RpL32 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL + +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DROBF (60S ribosomal protein L32 OS=Drosophila bifasciata GN=RpL32 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +   WR+PKGID RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVER  QL + +TN   RLRSQE E
Sbjct:   23 QSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.240e-37
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +K NWR+PKGID RVRR+FKG  LMPNIGYGS+KKTRH LP GF+K +VHNV ELE+LMM NR +CAEIAH  S+KKRK IVER  QL + VT   ARLRSQE E
Sbjct:   23 QSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR + +K NWR+P+GID RVRR+FKG +LMPNIGY S+KKT+H L +GF+KF+VHN+ E E+L+M N++Y AEIAHNVS+K RK IVER AQL + VTN   RL S+E E
Sbjct:   24 QSDRYVKIKWNWRKPRGIDNRVRRRFKGQILMPNIGYRSNKKTKHTLSSGFRKFLVHNIKEPEVLLMCNKSYRAEIAHNVSSKNRKAIVERAAQLAIRVTNPNTRLHSEENE 135          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_NEUCR (60S ribosomal protein L32 OS=Neurospora crassa GN=rpl-32 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 64/109 (58.72%), Postives = 85/109 (77.98%), Query Frame = -3
Query:  257 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQ 583
            Q DR + V   WR+PKGID RVRR+F+G + MP+IGYGS+KKTRH +P+G K F+V NV ++ELL+MHN+TY AEIAHNVS++KR EI+ R  QL V VTN  A++ ++
Sbjct:   22 QSDRFMRVDSAWRKPKGIDNRVRRRFRGTLAMPSIGYGSNKKTRHMMPSGHKAFLVSNVKDVELLLMHNKTYAAEIAHNVSSRKRIEIIARAKQLSVKVTNAKAKVTTE 130          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32A_SCHPO (60S ribosomal protein L32-A OS=Schizosaccharomyces pombe GN=rpl32a PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = -3
Query:  254 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQE 583
            Q DR   V E+WR+P+GID  VRR+F+G + MP IGYG++KKTR+ +PNG K F+V NV+++ELL+MHN+TY AEIA NVS +KR EIVE+   L V VTN  A++RSQE
Sbjct:   18 QSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32B_SCHPO (60S ribosomal protein L32-B OS=Schizosaccharomyces pombe GN=rpl32b PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.910e-30
Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = -3
Query:  254 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQE 583
            Q D    V E+WR+P+GID  VRR+F+G + MP IGYG++KKTR+ +PNG K F+V NV+++ELL+MHN+TY AEIA NVS +KR EIVE+   L V VTN  A++RSQE
Sbjct:   18 QSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_DICDI (60S ribosomal protein L32 OS=Dictyostelium discoideum GN=rpl32 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 62/112 (55.36%), Postives = 77/112 (68.75%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q D    V  +WR+P+GID RVRR+F G   MP+IG+GS K T+   P+GFK+FV+ NV ELE+L+M NR Y A I H VS K RK IVER A+L + VT   ARLRS+E E
Sbjct:   22 QSDLFKRVGASWRKPRGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNVQELEVLLMQNRRYAAVIFHGVSAKSRKAIVERAAELNIKVTTPNARLRSEERE 133          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_ASHGO (60S ribosomal protein L32 OS=Ashbya gossypii GN=RPL32 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = -3
Query:  266 DRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARL 577
            DR   V ENWR+ KGID  VRR+F+G +  P IGYGS+KKTR   P+G K ++V N+ +LE+LMMH +TY AEIA NVS+K R  I+ R   L + VTN   RL
Sbjct:   24 DRYHRVAENWRKQKGIDSVVRRRFRGQISEPTIGYGSNKKTRFMTPSGHKTYLVSNIKDLEVLMMHTKTYAAEIASNVSSKNRVSILARAKALGIKVTNPKGRL 127          
The following BLAST results are available for this feature:
BLAST of FC929004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RL32_DROMD7.700e-3867.8660S ribosomal protein L32 OS=Drosophila madeirensi... [more]
RL32_DROGU7.700e-3867.8660S ribosomal protein L32 OS=Drosophila guanche GN... [more]
RL32_DROBF7.700e-3867.8660S ribosomal protein L32 OS=Drosophila bifasciata... [more]
RL32_APIME2.240e-3768.7560S ribosomal protein L32 OS=Apis mellifera GN=RpL... [more]
RL32P_MOUSE6.101e-3562.50Putative 60S ribosomal protein L32' OS=Mus musculu... [more]
RL32_NEUCR1.407e-3158.7260S ribosomal protein L32 OS=Neurospora crassa GN=... [more]
RL32A_SCHPO1.191e-3059.0960S ribosomal protein L32-A OS=Schizosaccharomyces... [more]
RL32B_SCHPO5.910e-3058.1860S ribosomal protein L32-B OS=Schizosaccharomyces... [more]
RL32_DICDI2.745e-2755.3660S ribosomal protein L32 OS=Dictyostelium discoid... [more]
RL32_ASHGO3.710e-2453.8560S ribosomal protein L32 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BG12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929004 ID=FC929004; Name=FC929004; organism=Citrus clementina; type=EST; length=684bp
TTTTTTTTTTTTTTTTTATGGCATAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAACTTGACATAACATTAATCATGCTCCACAA
AAGACAACAAATTCAAAATATCATTCAGGTGACAAATACAAAATACGTCA
CAATTCACCCCTGGAAATGTTCATCCATTCCAAAAACAACCTAGGAAACA
TTTGGCCAAAAGCCAACACTAACACAAAATATAGAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACAACCA
ATTGTGCACCACGCTCGACAATCTCCTTTCTCTTCTTGGTGGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAATAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAAATAGT
GGCGTGTTTTCTTGTCCGAGCCGTAACCAATATTGGGCATCAAAACACAT
CCTTTGAACTTTCTCCTGACACGTCAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACCCTGGGGCCTCTTGAACTTCT
TGAAACGCTTCTTCACTATCTTCTTGGTCAGCAAACGAACAGCCATTTTT
TCTAAAACGATGAACCGCGGGCTAACTGCCCCCA
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